An information content entity that refers to a real date corresponding to simulator time zero.
Diagram
Type
dateTime
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="scenarioDate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000185" type="dateTime" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that refers to a real date corresponding to simulator time zero.</documentation></annotation></element>
<element name="apolloLocationCode" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000259" type="tns:ApolloLocationCode" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that refers to a particular geographical region and that is constructed per guidelines of the Apollo project.</documentation></annotation></element>
An information content entity that specifies a geographical region by (1) listing the names of other geographical regions whose mereological sum constitutes it and optionally (2) listing the names of other geographical regions that are subsequently subtracted from the mereological sum.
<element name="locationDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000377" type="tns:LocationDefinition" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that specifies a geographical region by (1) listing the names of other geographical regions whose mereological sum constitutes it and optionally (2) listing the names of other geographical regions that are subsequently subtracted from the mereological sum.</documentation></annotation></element>
A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter.
<element name="radius" sawsdl:modelReference="http://purl.obolibrary.org/obo/PATO_0002390" type="tns:Distance" maxOccurs="1" minOccurs="1"><annotation><documentation>A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter.</documentation></annotation></element>
A measurement datum that is the output of counting.
Diagram
Type
positiveInteger
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="count" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000032" type="positiveInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>A measurement datum that is the output of counting.</documentation></annotation></element>
A numeral that indexes a specific time step of a simulation.
Diagram
Type
int
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="simulatorTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000069" type="int" maxOccurs="1" minOccurs="1"><annotation><documentation>A numeral that indexes a specific time step of a simulation.</documentation></annotation></element>
A information content entity that specifies the date of a census.
Diagram
Type
dateTime
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="referenceDate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000240" type="dateTime" maxOccurs="1" minOccurs="0"><annotation><documentation>A information content entity that specifies the date of a census.</documentation></annotation></element>
An identifier that denotes a group of organisms or groups of organisms based on common ancestors.
Diagram
Type
token
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="cladeName" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000232" type="token" maxOccurs="1" minOccurs="0"><annotation><documentation>An identifier that denotes a group of organisms or groups of organisms based on common ancestors.</documentation></annotation></element>
A name of a temporal region that is systematized according to a particular calendar system, such as the Gregorian calendar.
Diagram
Type
dateTime
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="date" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000429" type="dateTime" maxOccurs="1" minOccurs="0"><annotation><documentation>A name of a temporal region that is systematized according to a particular calendar system, such as the Gregorian calendar.</documentation></annotation></element>
A human social role borne by a human being being realized in behaviour which is considered socially appropriate for individuals of a specific sex in the context of a specific culture.
<element name="sex" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000007" type="tns:GenderEnum" maxOccurs="1" minOccurs="0"><annotation><documentation>A human social role borne by a human being being realized in behaviour which is considered socially appropriate for individuals of a specific sex in the context of a specific culture.</documentation></annotation></element>
A data item that specifies the epidemiologically-relevant state of a host organism at a specific time with respect to infection with a particular pathogen.
<element name="infectionState" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000217" type="tns:InfectionStateEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the epidemiologically-relevant state of a host organism at a specific time with respect to infection with a particular pathogen.</documentation></annotation></element>
An identifier that is an integer numeral that denotes some citation.
Diagram
Type
nonNegativeInteger
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="referenceId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000519" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>An identifier that is an integer numeral that denotes some citation.</documentation></annotation></element>
<element name="mortalityRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000445" type="tns:Rate" maxOccurs="1" minOccurs="1"><annotation><documentation>A rate measurement datum that specifies the percentage of organisms within a population that have died over a given time interval.</documentation></annotation></element>
An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.
<element name="pathogen" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000237" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"><annotation><documentation>An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.</documentation></annotation></element>
<element name="host" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000238" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.</documentation></annotation></element>
<element name="disease" sawsdl:modelReference="http://purl.obolibrary.org/obo/OGMS_0000031" type="tns:SnomedId" maxOccurs="1" minOccurs="1"><annotation><documentation>A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.</documentation></annotation></element>
An identifier curated by the NCBI taxonomy database that has been used to specify the species of some organism in which some disease has been realized.
<element name="speciesWithDisease" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000484" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier curated by the NCBI taxonomy database that has been used to specify the species of some organism in which some disease has been realized.</documentation></annotation></element>
A process that is part of an infectious disease course, has the same beginning temporal boundary as the disease course, and has an ending temporal boundary at the onset of symptoms due to the infectious disease.
<element name="incubationPeriod" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000317" type="tns:Duration" maxOccurs="1" minOccurs="0"><annotation><documentation>A process that is part of an infectious disease course, has the same beginning temporal boundary as the disease course, and has an ending temporal boundary at the onset of symptoms due to the infectious disease.</documentation></annotation></element>
A duration of the time interval between the host acquiring an infection and the host bearing a contagiousness disposition during the same disease course within a population of hosts.
<element name="latentPeriodDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000017" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A duration of the time interval between the host acquiring an infection and the host bearing a contagiousness disposition during the same disease course within a population of hosts.</documentation></annotation></element>
<element name="infectiousPeriodDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000016" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A duration of the parts of an infection during which the host bears an infectious disposition in a population of hosts.</documentation></annotation></element>
The average number of transmissions of an infectious agent from an infectious organism to a susceptible organism within a completely susceptible population.
<element name="basicReproductionNumbers" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000002" type="tns:ReproductionNumber" maxOccurs="unbounded" minOccurs="1"><annotation><documentation>The average number of transmissions of an infectious agent from an infectious organism to a susceptible organism within a completely susceptible population.</documentation></annotation></element>
<element name="contaminatedAbioticThing" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000571" type="tns:AbioticThingEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An abiotic ecosystem element that is participant in some biological contamination process.</documentation></annotation></element>
An information content entity that represents the rate that an infection moves from infected individuals to susceptible individuals in a population.
Diagram
Type
string
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="beta" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000191" type="string" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that represents the rate that an infection moves from infected individuals to susceptible individuals in a population.</documentation></annotation></element>
<element name="colonizationDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000490" type="tns:Duration" maxOccurs="1" minOccurs="0"><annotation><documentation>A duration that measures the temporal interval occupied by some colonization.</documentation></annotation></element>
<element name="probabilityOfInfectionOverTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000530" type="tns:ConditionalProbabilityDistribution" maxOccurs="1" minOccurs="0"><annotation><documentation>A conditional probability whose value is dependent upon the duration of some colonization or infection.</documentation></annotation></element>
<element name="contaminationDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000505" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A duration that measures a temporal region occupied by some contamination.</documentation></annotation></element>
<element name="controlMeasureStartTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000208" type="tns:TriggerDefinition" maxOccurs="unbounded" minOccurs="1"><annotation><documentation>An information content entity that specifies the start time of the implementation of a infectious disease control strategy.</documentation></annotation></element>
<element name="controlMeasureStopTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000260" type="tns:TriggerDefinition" maxOccurs="unbounded" minOccurs="0"><annotation><documentation>An information content entity that specifies the time at which an infectious disease control strategy ends.</documentation></annotation></element>
A measurement datum of the time interval from the decision to implement an infectious disease control strategy to the start of the control strategy expressed in number of time intervals.
<element name="controlMeasureResponseDelay" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000133" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum of the time interval from the decision to implement an infectious disease control strategy to the start of the control strategy expressed in number of time intervals.</documentation></annotation></element>
A measurement datum of the time interval from the decision to cease an infectious disease control strategy to the time the control strategy ends expressed in number of time intervals.
<element name="controlMeasureStandDownDelay" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000263" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum of the time interval from the decision to cease an infectious disease control strategy to the time the control strategy ends expressed in number of time intervals.</documentation></annotation></element>
A plan specification that specifies the capacity to administer a particular treatment over a specific temporal interval in a specified geographical region.
<element name="capacitySchedule" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000212" type="tns:Schedule" minOccurs="1" maxOccurs="1"><annotation><documentation>A plan specification that specifies the capacity to administer a particular treatment over a specific temporal interval in a specified geographical region.</documentation></annotation></element>
An identifier that refers to the legal person that creates and maintains software.
Diagram
Type
token
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="softwareDeveloper" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000105" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that refers to the legal person that creates and maintains software.</documentation></annotation></element>
An identifier that refers to all version of a specific software.
Diagram
Type
token
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="softwareName" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000109" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that refers to all version of a specific software.</documentation></annotation></element>
An identifier that, as part of a complete software identifier, refers to one specific version of the software.
Diagram
Type
token
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="softwareVersion" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000108" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that, as part of a complete software identifier, refers to one specific version of the software.</documentation></annotation></element>
A unique resource locator that constitutes a reference to some software license.
Diagram
Type
anyURI
Properties
content
simple
Source
<element name="licenseLocation" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000539" type="anyURI"><annotation><documentation>A unique resource locator that constitutes a reference to some software license.</documentation></annotation></element>
An identifier that, as part of a complete software license identifier, refers to one specific version of the software license.
Diagram
Type
token
Properties
content
simple
Source
<element name="licenseVersion" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000537" type="token"><annotation><documentation>An identifier that, as part of a complete software license identifier, refers to one specific version of the software license.</documentation></annotation></element>
An identifier that refers to all versions of a specific software license.
Diagram
Type
token
Properties
content
simple
Source
<element name="licenseName" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000538" type="token"><annotation><documentation>An identifier that refers to all versions of a specific software license.</documentation></annotation></element>
A textual entity that specifies characteristics of some entity.
Diagram
Type
string
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="description" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000476" type="string" maxOccurs="1" minOccurs="1"><annotation><documentation>A textual entity that specifies characteristics of some entity.</documentation></annotation></element>
A data item that is produced as the output of an averaging data transformation and represents the average value of the input data.
Diagram
Type
double
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="mean" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0000679" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that is produced as the output of an averaging data transformation and represents the average value of the input data.</documentation></annotation></element>
A data item that specifies the dispersion of values around some parameter in a set of data, and whose values are standardized to express the same unit of measure as the parameter of interest.
<element name="standardDeviation" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000448" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the dispersion of values around some parameter in a set of data, and whose values are standardized to express the same unit of measure as the parameter of interest.</documentation></annotation></element>
An action specification that delineates some minimum value or maximum value for some test statistic within a continuous probability distribution that is meant to serve as a lower bound or upper bound, respectively, for some population or sample of interest.
<element name="cutTailAt" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000481" type="tns:PositiveDouble" maxOccurs="1" minOccurs="0"><annotation><documentation>An action specification that delineates some minimum value or maximum value for some test statistic within a continuous probability distribution that is meant to serve as a lower bound or upper bound, respectively, for some population or sample of interest.</documentation></annotation></element>
A data item that specifies the smallest numerical value in a data set of scalar measurement data items.
Diagram
Type
double
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="minimumValue" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000432" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the smallest numerical value in a data set of scalar measurement data items.</documentation></annotation></element>
A data item that specifies the largest numerical value in a data set of scalar measurement data itmes.
Diagram
Type
double
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="maximumValue" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000433" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the largest numerical value in a data set of scalar measurement data itmes.</documentation></annotation></element>
An information content entity that delimits an interval data structure based on some value that is less than or equal to all other values within that data structure.
Diagram
Type
double
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="lowerBound" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000436" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that delimits an interval data structure based on some value that is less than or equal to all other values within that data structure.</documentation></annotation></element>
An information content entity that delimits an interval data structure based on some value that is greater than or equal to all other values within that data structure.
Diagram
Type
double
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="upperBound" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000447" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that delimits an interval data structure based on some value that is greater than or equal to all other values within that data structure.</documentation></annotation></element>
<element name="confidence" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000434" type="tns:Percent" maxOccurs="1" minOccurs="1"><annotation><documentation>A predicted data item that estimates how reliable some method of statistical inference will be at estimating the population parameter of interest.</documentation></annotation></element>
statistical sample size is a count evaluating the number of individual experimental units
Diagram
Type
nonNegativeInteger
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="sampleSize" sawsdl:modelReference="http://purl.obolibrary.org/obo/STATO_0000088" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>statistical sample size is a count evaluating the number of individual experimental units</documentation></annotation></element>
A data item that is produced as the output of a center calculation data transformation and represents the center value of the input data.
Diagram
Type
double
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="median" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0000674" type="double" maxOccurs="1" minOccurs="0"><annotation><documentation>A data item that is produced as the output of a center calculation data transformation and represents the center value of the input data.</documentation></annotation></element>
<element name="gonotrophicPeriodDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000313" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A time measurement datum of the length of the temporal interval occupied by a gonotropic period.</documentation></annotation></element>
An average value that specifies the number of eggs produced during one reproductive cycle for each individual female within a population.
Diagram
Type
nonNegativeInteger
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="eggsPerBrood" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000453" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>An average value that specifies the number of eggs produced during one reproductive cycle for each individual female within a population.</documentation></annotation></element>
An epidemic simulator action specification that specifies the minimum number of eggs that any simulated female mosquito will oviposit during a gonotrophic cycle.
Diagram
Type
positiveInteger
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="minimumEggsPerOviposition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000471" type="positiveInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>An epidemic simulator action specification that specifies the minimum number of eggs that any simulated female mosquito will oviposit during a gonotrophic cycle.</documentation></annotation></element>
A rate measurement datum that measures the percentage decrease per unit time (typically per day) in the number of offspring to which a female mosquito passes an infection with a particular pathogen (e.g., Wolbachia).
<element name="ageDependentFecundityReduction" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000472" type="tns:Rate" maxOccurs="1" minOccurs="0"><annotation><documentation>A rate measurement datum that measures the percentage decrease per unit time (typically per day) in the number of offspring to which a female mosquito passes an infection with a particular pathogen (e.g., Wolbachia).</documentation></annotation></element>
A predicted data item that specifies the frequency with which a female mosquito feeds on or probes the host given an interaction between the mosquito and the host that brings them within a certain proximity (the bite radius).
<element name="biteProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000457" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="0"><annotation><documentation>A predicted data item that specifies the frequency with which a female mosquito feeds on or probes the host given an interaction between the mosquito and the host that brings them within a certain proximity (the bite radius).</documentation></annotation></element>
A length measurement datum that specifies the radius of a circle, which is centered at a vector organism, for which there is a certain probability that the vector organism will bite a susceptible host.
<element name="biteRadius" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000440" type="tns:Distance" maxOccurs="1" minOccurs="0"><annotation><documentation>A length measurement datum that specifies the radius of a circle, which is centered at a vector organism, for which there is a certain probability that the vector organism will bite a susceptible host.</documentation></annotation></element>
<element name="timeBetweenBites" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000441" type="tns:Duration" maxOccurs="1" minOccurs="0"><annotation><documentation>A duration that measures the temporal interval between some vector bite n and some vector bite n+1.</documentation></annotation></element>
A rate measurement datum of that divides the total distance traveled during some migration process by the duration of the temporal interval occupied by that process.
<element name="migrationSpeed" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000442" type="tns:Rate" maxOccurs="1" minOccurs="0"><annotation><documentation>A rate measurement datum of that divides the total distance traveled during some migration process by the duration of the temporal interval occupied by that process.</documentation></annotation></element>
An information content entity that specifies the probability that a given mosquito will realize a disposition to seek out a shaded environment when it isn't seeking a host or ovisite.
<element name="shadeAffinity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000443" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An information content entity that specifies the probability that a given mosquito will realize a disposition to seek out a shaded environment when it isn't seeking a host or ovisite.</documentation></annotation></element>
A length measurement datum that specifies the radius of a circle, which is centered at a male vector organism, for which there is some probability that it will mate with a female mosquito.
<element name="maleMatingRadius" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000458" type="tns:Distance" maxOccurs="1" minOccurs="0"><annotation><documentation>A length measurement datum that specifies the radius of a circle, which is centered at a male vector organism, for which there is some probability that it will mate with a female mosquito.</documentation></annotation></element>
An information content entity that specifies the probability that some male mosquito and some female mosquito within a certain distance of each other realize some disposition to reproduce with one another.
<element name="matingProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000450" type="tns:Probability" maxOccurs="1" minOccurs="0"><annotation><documentation>An information content entity that specifies the probability that some male mosquito and some female mosquito within a certain distance of each other realize some disposition to reproduce with one another.</documentation></annotation></element>
An epidemic simulator action specification that specifies the linear distance a female mosquito will travel to find the next oviposition site after depositing some of its eggs at the previous one.
<element name="straightTravelAfterOviposit" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000452" type="tns:Distance" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator action specification that specifies the linear distance a female mosquito will travel to find the next oviposition site after depositing some of its eggs at the previous one.</documentation></annotation></element>
A rate measurement datum that specifies the ratio of distance travelled during a movement process to the duration of the time interval occupied by the process.
<element name="speedOfMovement" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000444" type="tns:Rate" maxOccurs="1" minOccurs="0"><annotation><documentation>A rate measurement datum that specifies the ratio of distance travelled during a movement process to the duration of the time interval occupied by the process.</documentation></annotation></element>
An information content entity that specifies the probability that a given mosquito realizes some disposition to seek out a building if it isn't seeking a host or ovisite.
<element name="buildingAffinity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000451" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An information content entity that specifies the probability that a given mosquito realizes some disposition to seek out a building if it isn't seeking a host or ovisite.</documentation></annotation></element>
A taxonomy identifier curated by the National Center for Biotechnology Information that specifies the taxonomic classification of some population of organisms.
<element name="populationSpecies" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000491" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>A taxonomy identifier curated by the National Center for Biotechnology Information that specifies the taxonomic classification of some population of organisms.</documentation></annotation></element>
The average number of water containers testing positive for the presence of a particular mosquito species, typically Aedes aegyptii, per 100 households in the geographical region under surveillance.
Diagram
Type
nonNegativeInteger
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="breteauIndex" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000311" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>The average number of water containers testing positive for the presence of a particular mosquito species, typically Aedes aegyptii, per 100 households in the geographical region under surveillance.</documentation></annotation></element>
<element name="carryingCapacityPerHouse" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000473" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator action specification that specifies the maximum number of larvae that can exist across all ovisites in a given house.</documentation></annotation></element>
A conditional specification for some epidemic simulator that is triggered by a Boolean value that, if true, specifies that there is a non-uniform distribution of oviposition site carrying capacities in a simulated vector population.
Diagram
Type
boolean
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="heterogenousCarryingCapacity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000463" type="boolean" maxOccurs="1" minOccurs="0"><annotation><documentation>A conditional specification for some epidemic simulator that is triggered by a Boolean value that, if true, specifies that there is a non-uniform distribution of oviposition site carrying capacities in a simulated vector population.</documentation></annotation></element>
A data item that specifies, as a ratio, the total count of oviposition sites located externally to all places in a geographic region relative to the total count of oviposition sites located internally to some place in that geographic region.
<element name="ratioOfOutdoorToIndoorOvisites" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000446" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"><annotation><documentation>A data item that specifies, as a ratio, the total count of oviposition sites located externally to all places in a geographic region relative to the total count of oviposition sites located internally to some place in that geographic region.</documentation></annotation></element>
<element name="timeScale" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000268" type="tns:TimeScaleEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that designates a scale according to which time is measured (e.g., Gregorian Calendar).</documentation></annotation></element>
<element name="timeSinceTimeScaleZero" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000272" type="tns:FixedDuration" maxOccurs="1" minOccurs="1"><annotation><documentation>the duration of time that has elapsed from the zero reference point to a later time on the time scale</documentation></annotation></element>
A data item that specifies the fraction of the population known to have undergone a specific event that results in starting or stopping an infectious disease control strategy.
Diagram
Type
int
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="reactiveControlMeasureThreshold" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000131" type="int" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the fraction of the population known to have undergone a specific event that results in starting or stopping an infectious disease control strategy.</documentation></annotation></element>
<element name="unitOfMeasureForThreshold" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000295" type="tns:UnitOfMeasureEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A unit of measure for a threshold in a reactive infectious disease control strategy.</documentation></annotation></element>
An epidemic simulator action specification that specifies the comparison operation to use to determine whether some value, relative to a threshold, is one that should trigger the implementation of a control measure.
<element name="reactiveControlMeasureOperator" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000474" type="tns:OperatorEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An epidemic simulator action specification that specifies the comparison operation to use to determine whether some value, relative to a threshold, is one that should trigger the implementation of a control measure.</documentation></annotation></element>
<element name="speciesOfCase" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000485" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier curated by the NCBI taxonomy database that has been used to identify the species of some organism that meets a case definition.</documentation></annotation></element>
The sensitivity of a system that classifies organisms into the binary categories of individual who meets the criteria of a particular case definition and individual who does NOT meet the criteria of a particular type of disease X.
<element name="sensitivityOfCaseDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000277" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>The sensitivity of a system that classifies organisms into the binary categories of individual who meets the criteria of a particular case definition and individual who does NOT meet the criteria of a particular type of disease X.</documentation></annotation></element>
The specificity of a system that classifies organisms into the binary categories of individual who meets the criteria of a particular case definition and individual who does NOT meet the criteria of a particular type of disease X.
<element name="specificityOfCaseDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000381" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>The specificity of a system that classifies organisms into the binary categories of individual who meets the criteria of a particular case definition and individual who does NOT meet the criteria of a particular type of disease X.</documentation></annotation></element>
<element name="timeDelayOfCaseDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000267" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>The duration from the time an organism satisfies a case definition until a process or system detects the organism as satisfying that case definition</documentation></annotation></element>
The sensitivity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment.
<element name="sensitivityOfTreatmentDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000383" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>The sensitivity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment.</documentation></annotation></element>
The specificity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment.
<element name="specificityOfTreatmentDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000382" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>The specificity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment.</documentation></annotation></element>
The duration from the time an individual receives a treatment until the time a system designed to detect that the treatment occurred detects it in a population
<element name="timeDelayOfTreatmentDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000291" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>The duration from the time an individual receives a treatment until the time a system designed to detect that the treatment occurred detects it in a population</documentation></annotation></element>
Element tns:Treatment / tns:speciesOfTreatedOrganism
Namespace
http://types.apollo.pitt.edu/v4_0_1/
Annotations
An identifier curated by the NCBI taxonomy database that specifies the taxonomic classification of some organism that is the recipient of some treatment.
<element name="speciesOfTreatedOrganism" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000460" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier curated by the NCBI taxonomy database that specifies the taxonomic classification of some organism that is the recipient of some treatment.</documentation></annotation></element>
Element tns:Treatment / tns:numDosesInTreatmentCourse
Namespace
http://types.apollo.pitt.edu/v4_0_1/
Annotations
The count of the number of doses that are part of a treatment course.
Diagram
Type
positiveInteger
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="numDosesInTreatmentCourse" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000281" type="positiveInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>The count of the number of doses that are part of a treatment course.</documentation></annotation></element>
<element name="durationOfTreatmentCourse" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000280" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A duration that measures the temporal interval occupied by a treatment course.</documentation></annotation></element>
A simulation of a population or populations of organisms of a particular biological taxon that simulates a particular type of event or types of event that occur in a specified time interval.
<element name="simulatorReferencablePopulation" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000031" type="tns:TargetPopulationDefinition" maxOccurs="1" minOccurs="0"><annotation><documentation>A simulation of a population or populations of organisms of a particular biological taxon that simulates a particular type of event or types of event that occur in a specified time interval.</documentation></annotation></element>
<element name="diseaseOutcome" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000204" type="tns:DiseaseOutcomeEnum" maxOccurs="1" minOccurs="0"><annotation><documentation>A processual entity that is either the outcome of a disease course or a part of a disease course and has etiological relevance.</documentation></annotation></element>
<element name="compliance" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000139" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum about the fraction of individuals in a population that elect to participate in a control strategy when offered.</documentation></annotation></element>
<element name="delayFromSymptomsToTreatment" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000258" type="tns:Duration" maxOccurs="1" minOccurs="0"><annotation><documentation>The duration between the appearance of symptoms of a disease and the start of a treatment.</documentation></annotation></element>
<element name="controlMeasureNamedPrioritizationScheme" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000517" type="tns:NamedPrioritizationSchemeEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An action specification that is part of an infectious disease control strategy that has at least one rule pertaining to some control measure.</documentation></annotation></element>
A scalar value specification that gives the diameter in meters of the circular area around which all organisms in a population are living will receive a vaccination as part of a ring vaccination control measure.
Diagram
Type
nonNegativeInteger
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="ringDiameterInMeters" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000430" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>A scalar value specification that gives the diameter in meters of the circular area around which all organisms in a population are living will receive a vaccination as part of a ring vaccination control measure.</documentation></annotation></element>
A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label
Diagram
Type
token
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="label" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000009" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label</documentation></annotation></element>
a unique identifier that refers to an antiviral drug product
Diagram
Type
token
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="antiviralId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000122" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>a unique identifier that refers to an antiviral drug product</documentation></annotation></element>
<element name="efficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000454" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>A disposition of an organism to (i) undergo some bodily benefit that (ii) is triggered by a planned process.</documentation></annotation></element>
<element name="drugId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000461" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that denotes a drug product.</documentation></annotation></element>
<element name="drugTreatmentEfficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000502" type="tns:DrugTreatmentEfficacyForSimulatorConfiguration" maxOccurs="unbounded" minOccurs="1"><annotation><documentation>The efficacy measured for some instance(s) of drug treatment for preventing or ameliorating some disease outcome.</documentation></annotation></element>
<element name="vaccinationPreventableOutcome" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000218" type="tns:TreatmentPreventableOutcomeEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An objective specification that specifies the disease outcome a vaccination seeks to prevent.</documentation></annotation></element>
A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.
Diagram
Type
string
Properties
content
simple
minOccurs
1
maxOccurs
unbounded
Source
<element name="dataSets" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000100" type="string" maxOccurs="unbounded" minOccurs="1"><annotation><documentation>A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.</documentation></annotation></element>
An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a household.
<element name="householdTransmissionMultiplier" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000284" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a household.</documentation></annotation></element>
A temporal region occupied by some process wherein one or more potentially infectious contact organisms (i.e., contacted organisms) are under physical isolation from other organisms within a population.
<element name="quarantinePeriod" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000449" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A temporal region occupied by some process wherein one or more potentially infectious contact organisms (i.e., contacted organisms) are under physical isolation from other organisms within a population.</documentation></annotation></element>
An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a school.
<element name="schoolTransmissionMultiplier" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000283" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"><annotation><documentation>An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a school.</documentation></annotation></element>
An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a workplace.
<element name="workplaceTransmissionMultiplier" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000285" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"><annotation><documentation>An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a workplace.</documentation></annotation></element>
<element name="probabilityEntryDenied" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000278" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity specifying the probability that entry is denied as part of a border control strategy.</documentation></annotation></element>
<element name="probabilityExitDenied" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000279" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity specifying the probability that exit is denied as part of a border control strategy.</documentation></annotation></element>
A vector release site action specification for a Wolbachia control measure.
Diagram
Type
positiveInteger
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="wolbachiaSitesEveryNth" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000411" type="positiveInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>A vector release site action specification for a Wolbachia control measure.</documentation></annotation></element>
A vector control action specification that specifies the number of Wolbachia-infected adult mosquitoes to be released at each household for some Wolbachia control measure.
Diagram
Type
nonNegativeInteger
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="wolbachiaSeedAdultsPerHouse" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000426" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>A vector control action specification that specifies the number of Wolbachia-infected adult mosquitoes to be released at each household for some Wolbachia control measure.</documentation></annotation></element>
An epidemic simulator action specification that when set to true, results in the simuator clearing each simulated Wolbachia-infected mosquito of its simulated Wolbachia infection whenever it migrates out of the simulated population location.
Diagram
Type
boolean
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="clearWolbachiaOnMigration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000427" type="boolean" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator action specification that when set to true, results in the simuator clearing each simulated Wolbachia-infected mosquito of its simulated Wolbachia infection whenever it migrates out of the simulated population location.</documentation></annotation></element>
<element name="wolbachiaReleaseInterval" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000423" type="tns:FixedDuration" maxOccurs="1" minOccurs="0"><annotation><documentation>A seed release interval for a Wolbachia control measure.</documentation></annotation></element>
<element name="wolbachiaReleaseSites" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000410" type="tns:WolbachiaReleaseSiteEnum" maxOccurs="1" minOccurs="0"><annotation><documentation>A seed site for a Wolbachia control measure.</documentation></annotation></element>
A process of change in the egg mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population.
<element name="wolbachiaEffectOnEggMortalityRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000418" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>A process of change in the egg mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population.</documentation></annotation></element>
A process of change in the adult mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population.
<element name="wolbachiaEffectOnAdultMortalityRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000419" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>A process of change in the adult mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population.</documentation></annotation></element>
A process of change in the larval mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population.
<element name="wolbachiaEffectOnLarvalMortalityRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000420" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>A process of change in the larval mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population.</documentation></annotation></element>
A process of change in fecundity of females in a mosquito population that is the outcome of an infection in that population with a Wolbachia bacteria population.
<element name="wolbachiaEffectOnFecundity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000421" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>A process of change in fecundity of females in a mosquito population that is the outcome of an infection in that population with a Wolbachia bacteria population.</documentation></annotation></element>
An epidemic simulator actions specification that specifies the factor by which to multiply the mating probability of a male mosquito if it is infected with a Wolbachia bacterium.
<element name="wolbachiaEffectOnMatingProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000431" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator actions specification that specifies the factor by which to multiply the mating probability of a male mosquito if it is infected with a Wolbachia bacterium.</documentation></annotation></element>
The rate at which offspring of the Wolbachia-infected female mosquito subpopulation (of the overall mosquito population) are not infected with Wolbachia.
<element name="wolbachiaEffectOnLeakageRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000412" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>The rate at which offspring of the Wolbachia-infected female mosquito subpopulation (of the overall mosquito population) are not infected with Wolbachia.</documentation></annotation></element>
The rate at which bites of mosquitoes infected with both Wolbachia and a particular pathogen such as dengue result in an infection in a susceptible human host.
<element name="wolbachiaEffectOnVectorialCapacity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000413" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>The rate at which bites of mosquitoes infected with both Wolbachia and a particular pathogen such as dengue result in an infection in a susceptible human host.</documentation></annotation></element>
An adult vector control strategy that is used prior to a Wolbachia vector control strategy to increase the percentage of the adult population that gets infected with Wolbachia.
<element name="wolbachiaPreReleaseAdultSuppressionEfficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000415" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An adult vector control strategy that is used prior to a Wolbachia vector control strategy to increase the percentage of the adult population that gets infected with Wolbachia.</documentation></annotation></element>
An larvicide vector control strategy that is used prior to a Wolbachia vector control strategy to increase the percentage of the population that gets infected with Wolbachia.
<element name="wolbachiaPreReleaseLarvalSuppressionEfficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000416" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An larvicide vector control strategy that is used prior to a Wolbachia vector control strategy to increase the percentage of the population that gets infected with Wolbachia.</documentation></annotation></element>
A length measurement datum that specifies the radius of a circle that defines the geographical region in which some infectious disease control strategy will be implemented.
<element name="coverRadius" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000459" type="tns:Distance" maxOccurs="1" minOccurs="1"><annotation><documentation>A length measurement datum that specifies the radius of a circle that defines the geographical region in which some infectious disease control strategy will be implemented.</documentation></annotation></element>
A measurement datum that is the fraction of a particular adult vector population that have undergone 1) infection acquisition with a pathogen, and 2) have experienced some outcome of the resulting infection.
<element name="fractionOfVectorIndividualsAffected" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000437" type="tns:Fraction" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum that is the fraction of a particular adult vector population that have undergone 1) infection acquisition with a pathogen, and 2) have experienced some outcome of the resulting infection.</documentation></annotation></element>
A measurement datum that is the fraction of eggs laid by a particular host population that has been destroyed and thus will not develop into a new member of the population.
<element name="fractionReductionOfEggs" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000438" type="tns:Fraction" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum that is the fraction of eggs laid by a particular host population that has been destroyed and thus will not develop into a new member of the population.</documentation></annotation></element>
A measurement datum that is the fraction of the larval subpopulation of a particular host population that has died due to some event in the population (e.g, due to a particular control measure).
<element name="fractionReductionOfLarvae" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000439" type="tns:Fraction" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum that is the fraction of the larval subpopulation of a particular host population that has died due to some event in the population (e.g, due to a particular control measure).</documentation></annotation></element>
A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.
Diagram
Type
string
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="unitId" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000003" type="string" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.</documentation></annotation></element>
A CRID that constitutes a reference to an Internet resource.
Diagram
Type
anyURI
Properties
content
simple
minOccurs
0
maxOccurs
unbounded
Source
<element name="url" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMIABIS_0000019" type="anyURI" maxOccurs="unbounded" minOccurs="0"><annotation><documentation>A CRID that constitutes a reference to an Internet resource.</documentation></annotation></element>
A material entity that has as parts one or more sites large enough to contain humans, has as part one or more material entities that separates it from other sites, and bears a residence function.
Diagram
Type
string
Properties
content
simple
minOccurs
0
maxOccurs
unbounded
Source
<element name="houses" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000074" type="string" maxOccurs="unbounded" minOccurs="0"><annotation><documentation>A material entity that has as parts one or more sites large enough to contain humans, has as part one or more material entities that separates it from other sites, and bears a residence function.</documentation></annotation></element>
A geographic region that contains a sampling process.
Diagram
Type
token
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="whereSampled" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000520" type="token" maxOccurs="1" minOccurs="0"><annotation><documentation>A geographic region that contains a sampling process.</documentation></annotation></element>
<element name="testLoincId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000494" type="tns:LoincId" maxOccurs="1" minOccurs="0"><annotation><documentation>A LOINC identifier that refers to some clinical laboratory test conducted in a particular context..</documentation></annotation></element>
<element name="investigationLabel" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0001628" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>A CRID symbol used to identify an investigation.</documentation></annotation></element>
An identifier that denotes an organism included in some infection case count.
Diagram
Type
token
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="caseId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000510" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that denotes an organism included in some infection case count.</documentation></annotation></element>
A time measurement datum that refers to the temporal interval occupied by the life course of some organism and that takes 'years' as its measurement unit label.
Diagram
Type
nonNegativeInteger
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="ageInYears" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000504" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>A time measurement datum that refers to the temporal interval occupied by the life course of some organism and that takes 'years' as its measurement unit label.</documentation></annotation></element>
A racial identity is an information content entity that is the output of some racial identitification process and is intended to be a truthful statement about the genetic or cultural race of a person. Unlike data items they are not necessilary contributed or acquired by a reliable method.
Diagram
Type
string
Properties
content
simple
minOccurs
0
maxOccurs
unbounded
Source
<element name="race" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000098" type="string" maxOccurs="unbounded" minOccurs="0"><annotation><documentation>A racial identity is an information content entity that is the output of some racial identitification process and is intended to be a truthful statement about the genetic or cultural race of a person. Unlike data items they are not necessilary contributed or acquired by a reliable method.</documentation></annotation></element>
An identifier curated by the United States National Library of Medicine and National Institutes of Health that denotes some publication record in the MEDLINE database.
Diagram
Type
nonNegativeInteger
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="pubMedId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000495" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>An identifier curated by the United States National Library of Medicine and National Institutes of Health that denotes some publication record in the MEDLINE database.</documentation></annotation></element>
An identifier curated by ORCID, Inc. to denote some academic author.
Diagram
Type
string
Properties
content
simple
minOccurs
0
maxOccurs
1
Source
<element name="orcId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000496" type="string" maxOccurs="1" minOccurs="0"><annotation><documentation>An identifier curated by ORCID, Inc. to denote some academic author.</documentation></annotation></element>
<element name="totalCaseCount" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000569" type="tns:CaseCount" maxOccurs="1" minOccurs="0"><annotation><documentation>A data item that is the output of some infection case count.</documentation></annotation></element>
<element name="totalFatalCaseCount" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000568" type="tns:CaseCount" maxOccurs="1" minOccurs="0"><annotation><documentation>A data item that is the output of some infection case count and that represents the number of infectious disease cases that ended in death.</documentation></annotation></element>
<element name="conditionalProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000529" type="tns:ConditionalProbabilityDistribution" maxOccurs="1" minOccurs="1"><annotation><documentation>A probability whose value is dependent upon the occurrence, known or presumed, of some process.</documentation></annotation></element>
<element name="categoricalVariable" sawsdl:modelReference="http://purl.obolibrary.org/obo/STATO_0000252" type="tns:CategoricalVariableEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>a categorical variable is a variable which that can only assume a finite number of value and cast observation in a small number of categories</documentation></annotation></element>
a variable is a data item which can assume any of a set of values, either as determined by an agent or as randomly occuring through observation.
Diagram
Type
string
Properties
content
simple
Source
<element name="variable" sawsdl:modelReference="http://purl.obolibrary.org/obo/STATO_0000258" type="string"><annotation><documentation>a variable is a data item which can assume any of a set of values, either as determined by an agent or as randomly occuring through observation.</documentation></annotation></element>
<element name="healthcareFacilityId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000506" type="tns:RheaHealthcareFacilityEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A healthcare facility identifier that refers to some architectural structure that is the bearer of some healthcare function.</documentation></annotation></element>
A data item that denotes some context in which an individual realizes some employee role if he or she is a member of the labor force, or the context in which he or she is not a member of the labor force according to certain prespecified conditions.
<element name="employmentStatus" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000570" type="tns:EmploymentStatusEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that denotes some context in which an individual realizes some employee role if he or she is a member of the labor force, or the context in which he or she is not a member of the labor force according to certain prespecified conditions.</documentation></annotation></element>
An identifier that refers to some disease transmission model model.
Diagram
Type
string
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="modelId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000507" type="string" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that refers to some disease transmission model model.</documentation></annotation></element>
<element name="infectiousnessProfile" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000226" type="tns:ContinuousParametricProbabilityDistribution" maxOccurs="1" minOccurs="0"><annotation><documentation>A process profile that specifies the degree to which a host is likely to pass on an infection to a susceptible organism.</documentation></annotation></element>
<element name="unitOfTimeForSimulatorTimeStep" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000014" type="tns:UnitOfTimeEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A time unit that is part of a simulation time step action specification.</documentation></annotation></element>
<element name="numberOfUnitsOfTimeInOneSimulatorTimeStep" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000012" maxOccurs="1" minOccurs="1" type="tns:PositiveDouble"><annotation><documentation>A numeral that is part of a simulation time step action specification.</documentation></annotation></element>
The action specification that specifies the number of time steps a simulation is going to run.
Diagram
Type
positiveInteger
Properties
content
simple
minOccurs
1
maxOccurs
1
Source
<element name="runLength" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000015" type="positiveInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>The action specification that specifies the number of time steps a simulation is going to run.</documentation></annotation></element>
A dataset that represents at least one pathogen population (of a particular biological taxon) in one host population (of a particular biological taxon) in an ecosystem in a particular location at a particular point in time.
<complexType name="InfectiousDiseaseScenario" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000184"><annotation><documentation>A dataset that represents at least one pathogen population (of a particular biological taxon) in one host population (of a particular biological taxon) in an ecosystem in a particular location at a particular point in time.</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="scenarioDate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000185" type="dateTime" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that refers to a real date corresponding to simulator time zero.</documentation></annotation></element><element name="scenarioLocation" type="tns:Location" maxOccurs="1" minOccurs="1"></element><element name="populations" type="tns:Population" maxOccurs="unbounded" minOccurs="1"/><element name="infections" type="tns:Infection" maxOccurs="unbounded" minOccurs="1"/><element name="colonizations" type="tns:Colonization" maxOccurs="unbounded" minOccurs="0"></element><element name="contaminations" type="tns:Contamination" maxOccurs="unbounded" minOccurs="0"/><element name="contaminatedThingCensuses" type="tns:ContaminatedThingCensus" maxOccurs="unbounded" minOccurs="0"></element><element name="abioticThingCensuses" type="tns:AbioticThingCensus" maxOccurs="unbounded" minOccurs="0"></element><element name="infectiousDiseaseControlStrategies" type="tns:InfectiousDiseaseControlMeasure" maxOccurs="unbounded" minOccurs="0"/><element name="scenarioCartesianOrigin" type="tns:ScenarioCartesianOrigin" maxOccurs="1" minOccurs="0"></element><element name="nonApolloParameters" type="tns:NonApolloParameter" maxOccurs="unbounded" minOccurs="0"></element></sequence></extension></complexContent></complexType>
<complexType name="Location" sawsdl:modelReference="http://purl.obolibrary.org/obo/GEO_000000372"><annotation><documentation>A site designated by some relative spatial orientation.</documentation></annotation><sequence><choice><element name="apolloLocationCode" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000259" type="tns:ApolloLocationCode" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that refers to a particular geographical region and that is constructed per guidelines of the Apollo project.</documentation></annotation></element><element name="locationDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000377" type="tns:LocationDefinition" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that specifies a geographical region by (1) listing the names of other geographical regions whose mereological sum constitutes it and optionally (2) listing the names of other geographical regions that are subsequently subtracted from the mereological sum.</documentation></annotation></element><element name="cartesianCircleLocationDefinition" type="tns:CartesianCircleLocationDefinition" maxOccurs="1" minOccurs="1"></element></choice><element name="textualDescription" type="string" maxOccurs="1" minOccurs="0"/></sequence></complexType>
<simpleType name="ApolloLocationCode" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000259"><annotation><documentation>An identifier that refers to a particular geographical region and that is constructed per guidelines of the Apollo project.</documentation></annotation><restriction base="token"><pattern value="[A-Z0-9]{2,17}"/></restriction></simpleType>
An information content entity that specifies a geographical region by (1) listing the names of other geographical regions whose mereological sum constitutes it and optionally (2) listing the names of other geographical regions that are subsequently subtracted from the mereological sum.
<complexType name="LocationDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000377"><annotation><documentation>An information content entity that specifies a geographical region by (1) listing the names of other geographical regions whose mereological sum constitutes it and optionally (2) listing the names of other geographical regions that are subsequently subtracted from the mereological sum.</documentation></annotation><sequence><element name="locationsIncluded" type="tns:ApolloLocationCode" maxOccurs="unbounded" minOccurs="1"/><element name="locationsExcluded" type="tns:ApolloLocationCode" maxOccurs="unbounded" minOccurs="0"/><element name="multiGeometries" type="tns:MultiGeometry" maxOccurs="unbounded" minOccurs="0"/></sequence></complexType>
<complexType name="CartesianCircleLocationDefinition"><sequence><element name="eastWestOffsetFromCartesianCenter" type="tns:Distance" maxOccurs="1" minOccurs="1"/><element name="northSouthOffsetFromCartesianCenter" type="tns:Distance" maxOccurs="1" minOccurs="1"/><element name="altitudeRelativeToCartesianCenter" type="tns:Distance" maxOccurs="1" minOccurs="1"/><element name="radius" sawsdl:modelReference="http://purl.obolibrary.org/obo/PATO_0002390" type="tns:Distance" maxOccurs="1" minOccurs="1"><annotation><documentation>A length quality which is equal to the length of any straight line segment that passes from the center of a circle to any endpoint on the circular boundary. The radius is half of the diameter.</documentation></annotation></element></sequence></complexType>
<complexType name="Distance" sawsdl:modelReference="http://purl.obolibrary.org/obo/PATO_0000040"><annotation><documentation>A quality that is the extent of space between two entities.</documentation></annotation><complexContent><extension base="tns:ParameterValue"><sequence><element name="unitOfDistance" sawsdl:modelReference="http://purl.obolibrary.org/obo/UO_0000001" type="tns:UnitOfDistanceEnum" maxOccurs="1" minOccurs="1"></element><element name="value" type="double" maxOccurs="1" minOccurs="1"></element></sequence></extension></complexContent></complexType>
<complexType name="Population" sawsdl:modelReference="http://purl.obolibrary.org/obo/PCO_0000001"><annotation><documentation>A collection of organisms, all of the same species, that live in the same place.</documentation></annotation><sequence><element name="location" type="tns:ApolloLocationCode" maxOccurs="1" minOccurs="1"/><element name="taxonId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000509" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that denotes a biological taxonomic group.</documentation></annotation></element><element name="count" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000032" type="positiveInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>A measurement datum that is the output of counting.</documentation></annotation></element><element name="infectionAndImmunityCensuses" type="tns:PopulationInfectionAndImmunityCensus" maxOccurs="unbounded" minOccurs="0"/><element name="colonizationCensuses" type="tns:PopulationColonizationCensus" maxOccurs="unbounded" minOccurs="0"/><choice><element name="individualsAndHouseholds" type="tns:IndividualsAndHouseholds" maxOccurs="1" minOccurs="0"/><element name="pointerToIndividualsAndHouseholds" type="tns:PointerToData" maxOccurs="1" minOccurs="0"/></choice><element name="individualBiologyAndBehavior" type="tns:IndividualBiologyAndBehavior" maxOccurs="1" minOccurs="0"/></sequence></complexType>
<simpleType name="NcbiTaxonId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000203"><annotation><documentation>An identifier curated by the NCBI Taxonomy that designates a biological taxon.</documentation></annotation><restriction base="token"><pattern value="[0-9]"/></restriction></simpleType>
<complexType name="PopulationInfectionAndImmunityCensus" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000157"><annotation><documentation>A data set that is the result of a population infection survey and a population immunity survey.</documentation></annotation><complexContent><extension base="tns:Census"><sequence><element name="pathogen" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000237" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"></element><element name="censusData" type="tns:PopulationInfectionAndImmunityCensusData" maxOccurs="1" minOccurs="1"></element></sequence></extension></complexContent></complexType>
<complexType name="Census" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000389"><annotation><documentation>A planned process that realizes a census plan specification.</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="description" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000476" type="string" maxOccurs="1" minOccurs="1"></element><element name="location" type="tns:Location" maxOccurs="1" minOccurs="1"></element><element name="simulatorTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000069" type="int" maxOccurs="1" minOccurs="1"><annotation><documentation>A numeral that indexes a specific time step of a simulation.</documentation></annotation></element><element name="referenceDate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000240" type="dateTime" maxOccurs="1" minOccurs="0"><annotation><documentation>A information content entity that specifies the date of a census.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="ApolloPathogenCode" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000219"><annotation><documentation>An information content entity that designates a biological taxon and optionally a clade of pathogens.</documentation></annotation><sequence><element name="ncbiTaxonId" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"/><element name="cladeName" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000232" type="token" maxOccurs="1" minOccurs="0"><annotation><documentation>An identifier that denotes a group of organisms or groups of organisms based on common ancestors.</documentation></annotation></element></sequence></complexType>
<complexType name="CensusData" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000173"><annotation><documentation>The count of a specific entity in a specified region at a specified time.</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="date" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000429" type="dateTime" maxOccurs="1" minOccurs="0"><annotation><documentation>A name of a temporal region that is systematized according to a particular calendar system, such as the Gregorian calendar.</documentation></annotation></element><element name="location" type="tns:Location" maxOccurs="1" minOccurs="1"></element></sequence></extension></complexContent></complexType>
<complexType name="PopulationInfectionAndImmunityCensusDataCell"><sequence><element name="ageRange" type="tns:AgeRangeCategoryDefinition" maxOccurs="1" minOccurs="0"></element><element name="sex" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000007" type="tns:GenderEnum" maxOccurs="1" minOccurs="0"><annotation><documentation>A human social role borne by a human being being realized in behaviour which is considered socially appropriate for individuals of a specific sex in the context of a specific culture.</documentation></annotation></element><choice><element name="infectionState" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000217" type="tns:InfectionStateEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the epidemiologically-relevant state of a host organism at a specific time with respect to infection with a particular pathogen.</documentation></annotation></element><element name="diseaseState" type="tns:DiseaseOutcomeEnum" maxOccurs="1" minOccurs="1"></element></choice><element name="fractionInState" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000135" type="tns:Fraction" maxOccurs="1" minOccurs="1"/></sequence></complexType>
<simpleType name="Fraction" sawsdl:modelReference="http://purl.obolibrary.org/obo/UO_0000191"><annotation><documentation>A dimensionless ratio unit which relates the part (the numerator) to the whole (the denominator).</documentation></annotation><restriction base="double"><minInclusive value="0"/><maxInclusive value="1"/></restriction></simpleType>
<complexType name="PopulationColonizationCensus" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000501"><annotation><documentation>A population census about the organisms specific to that population that were the host in some colonization acquisition.</documentation></annotation></complexType>
A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.
<complexType name="Individual" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0100026"><annotation><documentation>A material entity that is an individual living system, such as animal, plant, bacteria or virus, that is capable of replicating or reproducing, growth and maintenance in the right environment. An organism may be unicellular or made up, like humans, of many billions of cells divided into specialized tissues and organs.</documentation></annotation><sequence><element name="individualId" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"></element><element name="age" type="tns:FixedDuration" maxOccurs="1" minOccurs="0"/><element name="characteristics" type="tns:Characteristic" maxOccurs="unbounded" minOccurs="0"></element></sequence></complexType>
<complexType name="FixedDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000384"><annotation><documentation>A duration that is specified as a single number.</documentation></annotation><complexContent><extension base="tns:Duration"><sequence><element name="value" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="Duration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000243"><annotation><documentation>A measurement datum that quantifies a temporal region that is occupied by a processual entity.</documentation></annotation><complexContent><extension base="tns:ParameterValue"><sequence><element name="unitOfTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/UO_0000003" type="tns:UnitOfTimeEnum" maxOccurs="1" minOccurs="1"/><element name="referenceId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000519" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>An identifier that is an integer numeral that denotes some citation.</documentation></annotation></element></sequence></extension></complexContent></complexType>
A human or collection of humans that occupies a housing unit by storing their possessions there and habitually sleeping there thereby participating in the realization of its residence function.
<complexType name="Household" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000076"><annotation><documentation>A human or collection of humans that occupies a housing unit by storing their possessions there and habitually sleeping there thereby participating in the realization of its residence function.</documentation></annotation><sequence><element name="householdId" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"/><element name="groupQuarters" type="tns:ApolloLocationCode" maxOccurs="1" minOccurs="0"/><element name="unRelated" type="tns:ApolloLocationCode" maxOccurs="1" minOccurs="0"/><element name="individualIds" type="nonNegativeInteger" maxOccurs="unbounded" minOccurs="1"/></sequence></complexType>
<complexType name="LifeCycle" sawsdl:modelReference="http://purl.obolibrary.org/obo/OGMS_0000092"><annotation><documentation>A processual entity which has as parts all the processes in which a given organism is participant.</documentation></annotation><sequence><element name="lifeStagesWithDurationsAndMortalities" type="tns:LifeStageWithDurationAndMortality" maxOccurs="unbounded" minOccurs="1"></element></sequence></complexType>
Complex Type tns:LifeStageWithDurationAndMortality
Namespace
http://types.apollo.pitt.edu/v4_0_1/
Annotations
A data structure that refers to (1) a subpopulation of a population based on life stage, (2) the rate of mortality of that subpopulation, and (3) the average duration of time that the individuals in the subpopulation spend in that life stage.
<complexType name="LifeStageWithDurationAndMortality" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000417"><annotation><documentation>A data structure that refers to (1) a subpopulation of a population based on life stage, (2) the rate of mortality of that subpopulation, and (3) the average duration of time that the individuals in the subpopulation spend in that life stage.</documentation></annotation><sequence><element name="stage" type="tns:DevelopmentalStageEnum" maxOccurs="1" minOccurs="1"></element><element name="duration" type="tns:Duration" maxOccurs="1" minOccurs="1"></element><choice><element name="mortalityRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000445" type="tns:Rate" maxOccurs="1" minOccurs="1"><annotation><documentation>A rate measurement datum that specifies the percentage of organisms within a population that have died over a given time interval.</documentation></annotation></element><element name="mortalityFunction" type="tns:MortalityFunction" maxOccurs="1" minOccurs="1"></element></choice></sequence></complexType>
<complexType name="Rate" sawsdl:modelReference="http://purl.obolibrary.org/obo/UO_0000280"><annotation><documentation>A unit which represents a standard measurement occurrence of a process per unit time.</documentation></annotation><sequence><element name="numeratorUnitOfMeasure" type="tns:UnitOfMeasureEnum" maxOccurs="1" minOccurs="1"></element><element name="denominatorUnitOfMeasure" type="tns:UnitOfMeasureEnum" maxOccurs="1" minOccurs="1"></element><choice><element name="value" type="double" maxOccurs="1" minOccurs="1"></element><element name="probabilityDistribution" type="tns:ProbabilityDistribution" maxOccurs="1" minOccurs="1"></element></choice></sequence></complexType>
An information content entity that assigns a probability to each measurable subset of the possible outcomes of a random experiment, survey, or procedure of statistical inference.
<complexType name="ProbabilityDistribution" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000215"><annotation><documentation>An information content entity that assigns a probability to each measurable subset of the possible outcomes of a random experiment, survey, or procedure of statistical inference.</documentation></annotation><complexContent><extension base="tns:UncertainValue"><sequence><element name="referenceId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000519" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"/></sequence></extension></complexContent></complexType>
<complexType name="Behavior" sawsdl:modelReference="http://purl.obolibrary.org/obo/GO_0007610"><annotation><documentation>The internally coordinated responses (actions or inactions) of whole living organisms (individuals or groups) to internal or external stimuli.</documentation></annotation></complexType>
<complexType name="Infection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000331"><annotation><documentation>an infection in an ecosystem occurring in one population of organisms</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="pathogen" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000237" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"><annotation><documentation>An organism of a particular biological taxon that is the bearer of an infectious dispositions towards an organism of a different particular biological taxon.</documentation></annotation></element><element name="host" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000238" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>An organism of a particular biological taxon that is the site of reproduction of an organism of a different taxon.</documentation></annotation></element><element name="infectiousDiseases" type="tns:InfectiousDisease" maxOccurs="unbounded" minOccurs="0"></element><element name="infectionAcquisitionsFromInfectedHosts" type="tns:InfectionAcquisitionFromInfectedHost" maxOccurs="unbounded" minOccurs="0"></element><element name="infectionAcquisitionsFromContaminatedThings" type="tns:InfectionAcquisitionFromContaminatedAbioticThing" maxOccurs="unbounded" minOccurs="0"></element><element name="InfectionAcquisitionsFromColonizedHosts" type="tns:InfectionAcquisitionFromColonizedHost" maxOccurs="unbounded" minOccurs="0"/></sequence></extension></complexContent></complexType>
<complexType name="InfectiousDisease" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000239"><annotation><documentation>A disease that inheres in a host and, when realized, is realized as a disease course that is causally preceded by an infection.</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="disease" sawsdl:modelReference="http://purl.obolibrary.org/obo/OGMS_0000031" type="tns:SnomedId" maxOccurs="1" minOccurs="1"><annotation><documentation>A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.</documentation></annotation></element><element name="speciesWithDisease" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000484" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier curated by the NCBI taxonomy database that has been used to specify the species of some organism in which some disease has been realized.</documentation></annotation></element><element name="causalPathogen" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"/><element name="incubationPeriod" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000317" type="tns:Duration" maxOccurs="1" minOccurs="0"><annotation><documentation>A process that is part of an infectious disease course, has the same beginning temporal boundary as the disease course, and has an ending temporal boundary at the onset of symptoms due to the infectious disease.</documentation></annotation></element><element name="prodromalPeriod" type="tns:Duration" maxOccurs="1" minOccurs="0"></element><element name="fulminantPeriod" type="tns:Duration" maxOccurs="1" minOccurs="0"></element><element name="otherIntervals" type="tns:Interval" maxOccurs="unbounded" minOccurs="0"></element><element name="diseaseOutcomesWithProbabilities" type="tns:DiseaseOutcomeWithProbability" maxOccurs="unbounded" minOccurs="1"/></sequence></extension></complexContent></complexType>
<simpleType name="SnomedId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000469"><annotation><documentation>An identifier curated by IHTSDO that refers to some representational unit within its class hierarchy.</documentation></annotation><restriction base="token"><pattern value="[0-9]"/></restriction></simpleType>
<complexType name="DiseaseOutcomeWithProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000428"><annotation><documentation>A predicted data item expressing the probability that a disease outcome occurs during the disease course of an organism.</documentation></annotation><sequence><element name="title" type="string" maxOccurs="1" minOccurs="0"></element><element name="diseaseOutcome" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000204" type="tns:DiseaseOutcomeEnum" maxOccurs="1" minOccurs="1"></element><element name="probability" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"></element></sequence></complexType>
A data item that is about a proposition and has a numeric value between 0 and 1, inclusive, that is the output of some process of inference, such that 1) logical falsehoods and logical truths are assigned a value of 0 and 1, respectively, while contingent propositions are assigned some intermediate value; and 2) the process of inference conforms with rules for the calculation of probabilities, and that any interpretation of probability must specify the extent to which probabilities might be used to constrain the degrees of belief of rational agents.
<simpleType name="Probability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000470"><annotation><documentation>A data item that is about a proposition and has a numeric value between 0 and 1, inclusive, that is the output of some process of inference, such that 1) logical falsehoods and logical truths are assigned a value of 0 and 1, respectively, while contingent propositions are assigned some intermediate value; and 2) the process of inference conforms with rules for the calculation of probabilities, and that any interpretation of probability must specify the extent to which probabilities might be used to constrain the degrees of belief of rational agents.</documentation></annotation><restriction base="double"><minInclusive value="0"/><maxInclusive value="1"/></restriction></simpleType>
<complexType name="InfectionAcquisitionFromInfectedHost" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000265"><annotation><documentation>An infection acquisition whereby a susceptible host acquires an infection from an infectious host.</documentation></annotation><sequence><element name="infectedHost" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"/><element name="latentPeriodDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000017" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A duration of the time interval between the host acquiring an infection and the host bearing a contagiousness disposition during the same disease course within a population of hosts.</documentation></annotation></element><element name="infectiousPeriodDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000016" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A duration of the parts of an infection during which the host bears an infectious disposition in a population of hosts.</documentation></annotation></element><choice><element name="basicReproductionNumbers" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000002" type="tns:ReproductionNumber" maxOccurs="unbounded" minOccurs="1"><annotation><documentation>The average number of transmissions of an infectious agent from an infectious organism to a susceptible organism within a completely susceptible population.</documentation></annotation></element><element name="beta" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000191" type="tns:Rate" maxOccurs="1" minOccurs="1"/><element name="transmissionProbabilities" type="tns:TransmissionProbability" maxOccurs="unbounded" minOccurs="1"/><!-- <element name="forGlobalEpidemicSimulator" type="tns:GesParametersForContactAndTransmission"
maxOccurs="1" minOccurs="1"/> --><element name="inoculationRate" type="tns:Rate" maxOccurs="1" minOccurs="0"/></choice></sequence></complexType>
<complexType name="ReproductionNumber" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000043"><annotation><documentation>The average value of transmissions of the infectious agent from one infected organism to another, resulting in an infection.</documentation></annotation><sequence><choice><element name="exactValue" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"></element><element name="uncertainValue" type="tns:UncertainValue" maxOccurs="1" minOccurs="1"></element></choice><element name="referenceId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000519" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"></element></sequence></complexType>
<complexType name="TransmissionProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000211"><annotation><documentation>The probability of the occurence of an infection acquisition from one infected organism to another when in contact.</documentation></annotation><sequence><element name="contactDefinition" type="tns:ContactDefinitionEnum" maxOccurs="1" minOccurs="1"></element><element name="contactDefinitionText" type="token" maxOccurs="1" minOccurs="0"></element><element name="probability" type="tns:Probability" maxOccurs="1" minOccurs="1"></element></sequence></complexType>
<complexType name="InfectionAcquisitionFromContaminatedAbioticThing" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000264"><annotation><documentation>An infection acquisition whereby a susceptible host acquires an infection from a contaminated thing.</documentation></annotation><sequence><element name="contaminatedAbioticThing" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000571" type="tns:AbioticThingEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An abiotic ecosystem element that is participant in some biological contamination process.</documentation></annotation></element><element name="transmissionProbability" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"/></sequence></complexType>
<complexType name="InfectionAcquisitionFromColonizedHost"><sequence><element name="colonizedHost" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"/><choice><element name="transmissionProbability" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"/><element name="beta" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000191" type="string" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that represents the rate that an infection moves from infected individuals to susceptible individuals in a population.</documentation></annotation></element></choice></sequence></complexType>
<complexType name="Colonization" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000330"><annotation><documentation>a reproduction of a pathogen of a particular biological taxon inside a host organism of another taxon, without invasion of the tissues of the host.</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="pathogen" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000237" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"/><element name="host" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000238" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"></element><element name="colonizationDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000490" type="tns:Duration" maxOccurs="1" minOccurs="0"><annotation><documentation>A duration that measures the temporal interval occupied by some colonization.</documentation></annotation></element><element name="probabilityOfInfectionOverTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000530" type="tns:ConditionalProbabilityDistribution" maxOccurs="1" minOccurs="0"><annotation><documentation>A conditional probability whose value is dependent upon the duration of some colonization or infection.</documentation></annotation></element><element name="colonizationAcquisition" type="tns:ColonizationAcquisition" maxOccurs="unbounded" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="ConditionalProbabilityDistribution" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000245"><annotation><documentation>A probability distribution of two jointly distributed random variables X and Y, where Y is know to be a particular value.</documentation></annotation><complexContent><extension base="tns:ProbabilityDistribution"><sequence><element name="firstConditioningVariable" type="tns:ConditioningVariable" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
Complex Type tns:UnconditionalProbabilityDistribution
Namespace
http://types.apollo.pitt.edu/v4_0_1/
Annotations
An unconditional probability distribution is the probability distribution of an uncertain variable, U, implicitly incorporating the uncertainty introduced by any other relevant variables. Mathematically, U’s unconditional probability distribution is written {U | E}, where E represents the background state of information under which the distribution is assessed.
<complexType name="UnconditionalProbabilityDistribution" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000247"><annotation><documentation>An unconditional probability distribution is the probability distribution of an uncertain variable, U, implicitly incorporating the uncertainty introduced by any other relevant variables. Mathematically, U’s unconditional probability distribution is written {U | E}, where E represents the background state of information under which the distribution is assessed.</documentation></annotation><complexContent><extension base="tns:ProbabilityDistribution"/></complexContent></complexType>
a biological process where a pathogen organism of a particular biological taxon enters into a host organism of a particular taxon and begins to undergo reproduction in a location external to tissues of the host
<complexType name="ColonizationAcquisition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000332"><annotation><documentation>a biological process where a pathogen organism of a particular biological taxon enters into a host organism of a particular taxon and begins to undergo reproduction in a location external to tissues of the host</documentation></annotation><sequence><choice><element name="infectiousHostSource" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"/><element name="contaminatedSource" type="tns:AbioticThingEnum" maxOccurs="1" minOccurs="1"/><element name="colonizedHost" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"></element></choice><choice><element name="transmissionProbability" type="tns:TransmissionProbability" maxOccurs="1" minOccurs="1"/><element name="beta" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000191" type="tns:Rate" maxOccurs="unbounded" minOccurs="1"/></choice></sequence></complexType>
The process of existence without reproduction of a pathogen of a particular biological taxon in or on some material entity or the process of reproduction of a pathogen in or on a material entity that is not an organism.
<complexType name="Contamination" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000186"><annotation><documentation>The process of existence without reproduction of a pathogen of a particular biological taxon in or on some material entity or the process of reproduction of a pathogen in or on a material entity that is not an organism.</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="pathogen" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000237" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"/><element name="abioticThing" type="tns:AbioticThingEnum" maxOccurs="1" minOccurs="1"/><element name="contaminationDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000505" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A duration that measures a temporal region occupied by some contamination.</documentation></annotation></element><element name="contaminationAcquisition" type="tns:ContaminationAcquisition" maxOccurs="unbounded" minOccurs="1"/></sequence></extension></complexContent></complexType>
A biological process whereby an entity that is not in contact with a pathogen of a particular biological taxon begins to undergo contamination with that pathogen.
<complexType name="ContaminationAcquisition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000167"><annotation><documentation>A biological process whereby an entity that is not in contact with a pathogen of a particular biological taxon begins to undergo contamination with that pathogen.</documentation></annotation><sequence><choice><element name="infectiousHostSource" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"/><element name="contaminatedSource" type="token" maxOccurs="1" minOccurs="1"/><element name="colonizedHostSource" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"/></choice><element name="transmissionProbability" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"/></sequence></complexType>
<complexType name="ContaminatedThingCensus" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000201"><annotation><documentation>A census about contaminated things of a given type in an area of interest.</documentation></annotation><complexContent><extension base="tns:Census"><sequence><element name="kindOfThing" type="tns:AbioticThingEnum" maxOccurs="1" minOccurs="1"></element><element name="pathogen" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000237" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"/><element name="censusData" type="tns:ContaminatedThingCensusData" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="AbioticThingCensus" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000309"><annotation><documentation>A census of entities of a certain type or types in the abiotic ecosystem.</documentation></annotation><complexContent><extension base="tns:Census"><sequence><element name="abioticThing" type="tns:AbioticThingEnum" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="InfectiousDiseaseControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000086"><annotation><documentation>A plan specification whose objective specification is an infectious disease control objective specification.</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="description" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000476" type="string" maxOccurs="1" minOccurs="1"/><element name="location" type="tns:Location" maxOccurs="1" minOccurs="0"></element><element name="controlMeasureStartTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000208" type="tns:TriggerDefinition" maxOccurs="unbounded" minOccurs="1"><annotation><documentation>An information content entity that specifies the start time of the implementation of a infectious disease control strategy.</documentation></annotation></element><element name="controlMeasureStopTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000260" type="tns:TriggerDefinition" maxOccurs="unbounded" minOccurs="0"><annotation><documentation>An information content entity that specifies the time at which an infectious disease control strategy ends.</documentation></annotation></element><element name="controlMeasureResponseDelay" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000133" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum of the time interval from the decision to implement an infectious disease control strategy to the start of the control strategy expressed in number of time intervals.</documentation></annotation></element><element name="controlMeasureStandDownDelay" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000263" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum of the time interval from the decision to cease an infectious disease control strategy to the time the control strategy ends expressed in number of time intervals.</documentation></annotation></element><element name="logisticalSystems" type="tns:LogisticalSystem" maxOccurs="unbounded" minOccurs="0"/><element name="referenceId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000519" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"/><element name="templatedInfectiousDiseaseControlMeasureUrlsForSoftware" type="tns:TemplatedInfectiousDiseaseControlMeasureUrlForSoftware" minOccurs="0" maxOccurs="unbounded"/></sequence></extension></complexContent></complexType>
<complexType name="TriggerDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000261"><annotation><documentation>A rule that specifies the event that, when it occurs, is the trigger to either start or stop an infectious disease control strategy.</documentation></annotation></complexType>
<complexType name="LogisticalSystemNode"><sequence><element name="description" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000476" type="string" maxOccurs="1" minOccurs="0"></element><choice><element name="capacitySchedule" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000212" type="tns:Schedule" minOccurs="1" maxOccurs="1"><annotation><documentation>A plan specification that specifies the capacity to administer a particular treatment over a specific temporal interval in a specified geographical region.</documentation></annotation></element><element name="outputSchedule" type="tns:Schedule" minOccurs="1" maxOccurs="1"></element></choice><element name="children" type="tns:LogisticalSystemNode" maxOccurs="unbounded" minOccurs="0"/></sequence></complexType>
A plan specification that specifies 1) the quantity of which some material entity will be allocated to the eventual realization of some action specification, and 2) the temporal regions in which each action specification is to be realized.
<complexType name="Schedule" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000500"><annotation><documentation>A plan specification that specifies 1) the quantity of which some material entity will be allocated to the eventual realization of some action specification, and 2) the temporal regions in which each action specification is to be realized.</documentation></annotation><sequence><element name="unitOfMeasure" type="tns:UnitOfMeasureEnum" maxOccurs="1" minOccurs="1"></element><element name="scheduleElements" type="tns:ScheduleElement" maxOccurs="unbounded" minOccurs="1"></element></sequence></complexType>
<complexType name="SoftwareIdentification" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000106"><annotation><documentation>An identifier that refers to a specific piece of software.</documentation></annotation><sequence><element name="softwareDeveloper" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000105" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that refers to the legal person that creates and maintains software.</documentation></annotation></element><element name="softwareName" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000109" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that refers to all version of a specific software.</documentation></annotation></element><element name="softwareVersion" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000108" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that, as part of a complete software identifier, refers to one specific version of the software.</documentation></annotation></element><element name="softwareType" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000591" type="tns:ApolloSoftwareTypeEnum" maxOccurs="1" minOccurs="1"/><element name="softwareLicenseIdentification" type="tns:SoftwareLicenseIdentification" minOccurs="0"/><element name="customIdentifier" type="token" minOccurs="0"/></sequence></complexType>
<complexType name="SoftwareLicenseIdentification" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000536"><annotation><documentation>An identifier that refers to a specific software license.</documentation></annotation><sequence><element name="licenseLocation" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000539" type="anyURI"><annotation><documentation>A unique resource locator that constitutes a reference to some software license.</documentation></annotation></element><element name="licenseVersion" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000537" type="token"><annotation><documentation>An identifier that, as part of a complete software license identifier, refers to one specific version of the software license.</documentation></annotation></element><element name="licenseName" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000538" type="token"><annotation><documentation>An identifier that refers to all versions of a specific software license.</documentation></annotation></element><element name="attributionNotice" type="string"/></sequence></complexType>
<simpleType name="Percent" sawsdl:modelReference="http://purl.obolibrary.org/obo/UO_0000190"><annotation><documentation>A dimensionless unit which denotes an amount or magnitude of one quantity relative to another.</documentation></annotation><restriction base="nonNegativeInteger"><minInclusive value="0"/></restriction></simpleType>
<complexType name="UncertainDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000379"><annotation><documentation>A duration that is specified as a probability distribution over a range of numbers.</documentation></annotation><complexContent><extension base="tns:Duration"><sequence><element name="uncertainValue" type="tns:UncertainValue" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="LogNormalDistribution" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000079"><complexContent><extension base="tns:ContinuousParametricProbabilityDistribution"><sequence><element name="mean" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0000679" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that is produced as the output of an averaging data transformation and represents the average value of the input data.</documentation></annotation></element><element name="standardDeviation" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000448" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the dispersion of values around some parameter in a set of data, and whose values are standardized to express the same unit of measure as the parameter of interest.</documentation></annotation></element><element name="shiftRight" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"/><element name="cutTailAt" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000481" type="tns:PositiveDouble" maxOccurs="1" minOccurs="0"><annotation><documentation>An action specification that delineates some minimum value or maximum value for some test statistic within a continuous probability distribution that is meant to serve as a lower bound or upper bound, respectively, for some population or sample of interest.</documentation></annotation></element></sequence></extension></complexContent></complexType>
A continuous parametric probability distribution that is uniform; centered around the mean, parameter μ; and whose spread of standard deviations, parameter σ, adheres to the empirical rule.
<complexType name="NormalDistribution" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000036"><annotation><documentation>A continuous parametric probability distribution that is uniform; centered around the mean, parameter μ; and whose spread of standard deviations, parameter σ, adheres to the empirical rule.</documentation></annotation><complexContent><extension base="tns:ContinuousParametricProbabilityDistribution"><sequence><element name="mean" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0000679" type="double" maxOccurs="1" minOccurs="1"/><element name="standardDeviation" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000448" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"/><element name="shiftRight" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"/><element name="cutTailAt" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000481" type="tns:PositiveDouble" maxOccurs="1" minOccurs="0"/></sequence></extension></complexContent></complexType>
The Weibull distribution gives the distribution of lifetimes of objects. It was originally proposed to quantify fatigue data, but it is also used in analysis of systems involving a "weakest link."
<complexType name="WeibullDistribution" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000256"><annotation><documentation>The Weibull distribution gives the distribution of lifetimes of objects. It was originally proposed to quantify fatigue data, but it is also used in analysis of systems involving a "weakest link."</documentation></annotation><complexContent><extension base="tns:ContinuousParametricProbabilityDistribution"><sequence><element name="k-shape" type="tns:PositiveDouble" maxOccurs="1" minOccurs="1"/><element name="lambda-scale" type="tns:PositiveDouble" maxOccurs="1" minOccurs="1"/><element name="shiftRight" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"/><element name="cutTailAt" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000481" type="tns:PositiveDouble" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
the continuous uniform distribution or rectangular distribution is a family of symmetric probability distributions such that for each member of the family, all intervals of the same length on the distribution's support are equally probable.
<complexType name="ContinuousUniformDistribution" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000257"><annotation><documentation>the continuous uniform distribution or rectangular distribution is a family of symmetric probability distributions such that for each member of the family, all intervals of the same length on the distribution's support are equally probable.</documentation></annotation><complexContent><extension base="tns:ContinuousParametricProbabilityDistribution"><sequence><element name="minimumValue" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000432" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the smallest numerical value in a data set of scalar measurement data items.</documentation></annotation></element><element name="maximumValue" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000433" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the largest numerical value in a data set of scalar measurement data itmes.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="MeanWithConfidenceInterval" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000424"><annotation><documentation>A data structure that specifies both the sample mean and the confidence interval generated by the measurement process.</documentation></annotation><complexContent><extension base="tns:UncertainValue"><sequence><element name="mean" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0000679" type="double" maxOccurs="1" minOccurs="1"/><element name="lowerBound" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000436" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that delimits an interval data structure based on some value that is less than or equal to all other values within that data structure.</documentation></annotation></element><element name="upperBound" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000447" type="double" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity that delimits an interval data structure based on some value that is greater than or equal to all other values within that data structure.</documentation></annotation></element><element name="confidence" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000434" type="tns:Percent" maxOccurs="1" minOccurs="1"><annotation><documentation>A predicted data item that estimates how reliable some method of statistical inference will be at estimating the population parameter of interest.</documentation></annotation></element><element name="sampleSize" sawsdl:modelReference="http://purl.obolibrary.org/obo/STATO_0000088" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>statistical sample size is a count evaluating the number of individual experimental units</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="MeanWithStandardDeviation" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000425"><annotation><documentation>A data structure that specifies both the sample mean and the standard deviation generated by the measurement process.</documentation></annotation><complexContent><extension base="tns:UncertainValue"><sequence><element name="mean" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0000679" type="double" maxOccurs="1" minOccurs="1"/><element name="standardDeviation" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000448" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"/><element name="sampleSize" sawsdl:modelReference="http://purl.obolibrary.org/obo/STATO_0000088" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"></element></sequence></extension></complexContent></complexType>
<complexType name="MeanMedianMinimumMaximum" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000462"><annotation><documentation>A data structure that holds the mean, median, minimum value, and maximum value of one set of measurement data.</documentation></annotation><complexContent><extension base="tns:UncertainValue"><sequence><element name="mean" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0000679" type="double" maxOccurs="1" minOccurs="0"/><element name="median" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0000674" type="double" maxOccurs="1" minOccurs="0"><annotation><documentation>A data item that is produced as the output of a center calculation data transformation and represents the center value of the input data.</documentation></annotation></element><element name="minimumValue" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000432" type="double" maxOccurs="1" minOccurs="1"/><element name="maximumValue" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000433" type="double" maxOccurs="1" minOccurs="1"/><element name="sampleSize" sawsdl:modelReference="http://purl.obolibrary.org/obo/STATO_0000088" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"></element></sequence></extension></complexContent></complexType>
<simpleType name="vaccineOntologyId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000117"><annotation><documentation>An identifier that refers to a type of vaccine, i.e., one of a class of manufactured vaccines that public health would consider interchangable.</documentation></annotation><restriction base="token"><pattern value="[A-Z_0-9]{2,17}"/></restriction></simpleType>
An identifier curated by the National Library of Medicine as a unique string of integer numerals to be used as a standard way of denoting each concept in the RxNorm terminology.
Diagram
Type
restriction of token
Facets
pattern
[0-9]
Source
<simpleType name="RxNormId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000492"><annotation><documentation>An identifier curated by the National Library of Medicine as a unique string of integer numerals to be used as a standard way of denoting each concept in the RxNorm terminology.</documentation></annotation><restriction base="token"><pattern value="[0-9]"/></restriction></simpleType>
<simpleType name="LoincId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000493"><annotation><documentation>An identifier curated by the Regenstrief Institute to be used as a standard way of denoting each term in the LOINC database.</documentation></annotation><restriction base="string"><pattern value="[0-9]{5}-[0-9]{1}"/></restriction></simpleType>
<complexType name="MosquitoReproduction" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000312"><annotation><documentation>A multicellular organism reproduction that has as its agent a mosquito (taxon Culicidae, ID 7157)</documentation></annotation><complexContent><extension base="tns:Reproduction"><sequence><element name="gonotrophicPeriodDuration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000313" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A time measurement datum of the length of the temporal interval occupied by a gonotropic period.</documentation></annotation></element><element name="eggsPerBrood" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000453" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>An average value that specifies the number of eggs produced during one reproductive cycle for each individual female within a population.</documentation></annotation></element><element name="minimumEggsPerOviposition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000471" type="positiveInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>An epidemic simulator action specification that specifies the minimum number of eggs that any simulated female mosquito will oviposit during a gonotrophic cycle.</documentation></annotation></element><element name="ageDependentFecundityReduction" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000472" type="tns:Rate" maxOccurs="1" minOccurs="0"><annotation><documentation>A rate measurement datum that measures the percentage decrease per unit time (typically per day) in the number of offspring to which a female mosquito passes an infection with a particular pathogen (e.g., Wolbachia).</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="MosquitoBehavior" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000401"><annotation><documentation>An individual behavior of a mosquito (organism of family Culicidae).</documentation></annotation><complexContent><extension base="tns:Behavior"><sequence><element name="biteProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000457" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="0"><annotation><documentation>A predicted data item that specifies the frequency with which a female mosquito feeds on or probes the host given an interaction between the mosquito and the host that brings them within a certain proximity (the bite radius).</documentation></annotation></element><element name="biteRadius" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000440" type="tns:Distance" maxOccurs="1" minOccurs="0"><annotation><documentation>A length measurement datum that specifies the radius of a circle, which is centered at a vector organism, for which there is a certain probability that the vector organism will bite a susceptible host.</documentation></annotation></element><element name="timeBetweenBites" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000441" type="tns:Duration" maxOccurs="1" minOccurs="0"><annotation><documentation>A duration that measures the temporal interval between some vector bite n and some vector bite n+1.</documentation></annotation></element><element name="migrationSpeed" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000442" type="tns:Rate" maxOccurs="1" minOccurs="0"><annotation><documentation>A rate measurement datum of that divides the total distance traveled during some migration process by the duration of the temporal interval occupied by that process.</documentation></annotation></element><element name="shadeAffinity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000443" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An information content entity that specifies the probability that a given mosquito will realize a disposition to seek out a shaded environment when it isn't seeking a host or ovisite.</documentation></annotation></element><element name="maleMatingRadius" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000458" type="tns:Distance" maxOccurs="1" minOccurs="0"><annotation><documentation>A length measurement datum that specifies the radius of a circle, which is centered at a male vector organism, for which there is some probability that it will mate with a female mosquito.</documentation></annotation></element><element name="matingProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000450" type="tns:Probability" maxOccurs="1" minOccurs="0"><annotation><documentation>An information content entity that specifies the probability that some male mosquito and some female mosquito within a certain distance of each other realize some disposition to reproduce with one another.</documentation></annotation></element><element name="straightTravelAfterOviposit" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000452" type="tns:Distance" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator action specification that specifies the linear distance a female mosquito will travel to find the next oviposition site after depositing some of its eggs at the previous one.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="HumanBehavior" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000402"><annotation><documentation>An individual behavior of a human being.</documentation></annotation><complexContent><extension base="tns:Behavior"><sequence><element name="speedOfMovement" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000444" type="tns:Rate" maxOccurs="1" minOccurs="0"><annotation><documentation>A rate measurement datum that specifies the ratio of distance travelled during a movement process to the duration of the time interval occupied by the process.</documentation></annotation></element><element name="buildingAffinity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000451" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An information content entity that specifies the probability that a given mosquito realizes some disposition to seek out a building if it isn't seeking a host or ovisite.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="PopulationTreatmentCensus" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000187"><annotation><documentation>A census about a particular medical treatment of a population.</documentation></annotation><complexContent><extension base="tns:Census"><sequence><element name="populationSpecies" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000491" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>A taxonomy identifier curated by the National Center for Biotechnology Information that specifies the taxonomic classification of some population of organisms.</documentation></annotation></element><element name="treatmentCensusData" type="tns:PopulationTreatmentCensusData" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="OvipositionSiteCensus" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000315"><annotation><documentation>An abiotic ecosystem census of the locations where pregnant female mosquitos lay their eggs.</documentation></annotation><complexContent><extension base="tns:AbioticThingCensus"><sequence><element name="breteauIndex" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000311" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>The average number of water containers testing positive for the presence of a particular mosquito species, typically Aedes aegyptii, per 100 households in the geographical region under surveillance.</documentation></annotation></element><element name="carryingCapacityPerHouse" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000473" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator action specification that specifies the maximum number of larvae that can exist across all ovisites in a given house.</documentation></annotation></element><element name="heterogenousCarryingCapacity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000463" type="boolean" maxOccurs="1" minOccurs="0"><annotation><documentation>A conditional specification for some epidemic simulator that is triggered by a Boolean value that, if true, specifies that there is a non-uniform distribution of oviposition site carrying capacities in a simulated vector population.</documentation></annotation></element><element name="ratioOfOutdoorToIndoorOvisites" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000446" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"><annotation><documentation>A data item that specifies, as a ratio, the total count of oviposition sites located externally to all places in a geographic region relative to the total count of oviposition sites located internally to some place in that geographic region.</documentation></annotation></element><element name="maximumRatioOfOutdoorCarryingCapacityToIndoor" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"/></sequence></extension></complexContent></complexType>
<complexType name="TemporalTriggerDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000271"><annotation><documentation>An infectious disease control trigger definition that is based on the passage of a specified interval of time.</documentation></annotation><complexContent><extension base="tns:TriggerDefinition"><sequence><element name="timeScale" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000268" type="tns:TimeScaleEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that designates a scale according to which time is measured (e.g., Gregorian Calendar).</documentation></annotation></element><element name="timeSinceTimeScaleZero" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000272" type="tns:FixedDuration" maxOccurs="1" minOccurs="1"><annotation><documentation>the duration of time that has elapsed from the zero reference point to a later time on the time scale</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="DiseaseSurveillanceTriggerDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000269"><annotation><documentation>An infectious disease control trigger definition for a reactive control measure based on the outcome of disease surveillance.</documentation></annotation><complexContent><extension base="tns:TriggerDefinition"><sequence><element name="reactiveControlMeasureTest" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000130" type="token" maxOccurs="1" minOccurs="1"></element><element name="reactiveControlMeasureThreshold" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000131" type="int" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that specifies the fraction of the population known to have undergone a specific event that results in starting or stopping an infectious disease control strategy.</documentation></annotation></element><element name="unitOfMeasureForThreshold" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000295" type="tns:UnitOfMeasureEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A unit of measure for a threshold in a reactive infectious disease control strategy.</documentation></annotation></element><element name="reactiveControlMeasureOperator" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000474" type="tns:OperatorEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An epidemic simulator action specification that specifies the comparison operation to use to determine whether some value, relative to a threshold, is one that should trigger the implementation of a control measure.</documentation></annotation></element><element name="diseaseSurveillanceCapability" type="tns:DiseaseSurveillanceCapability" maxOccurs="1" minOccurs="1"></element></sequence></extension></complexContent></complexType>
A disposition of a disease surveillance infrastructure to detect the outbreak of one particular disease in the geographical region the infrastructure aims to cover.
<complexType name="DiseaseSurveillanceCapability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000266"><annotation><documentation>A disposition of a disease surveillance infrastructure to detect the outbreak of one particular disease in the geographical region the infrastructure aims to cover.</documentation></annotation><sequence><element name="location" type="tns:Location" maxOccurs="1" minOccurs="1"></element><element name="pathogen" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000237" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"></element><element name="speciesOfCase" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000485" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier curated by the NCBI taxonomy database that has been used to identify the species of some organism that meets a case definition.</documentation></annotation></element><element name="caseDefinition" type="tns:DiseaseOutcomeEnum" maxOccurs="1" minOccurs="1"></element><element name="sensitivityOfCaseDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000277" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>The sensitivity of a system that classifies organisms into the binary categories of individual who meets the criteria of a particular case definition and individual who does NOT meet the criteria of a particular type of disease X.</documentation></annotation></element><element name="specificityOfCaseDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000381" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>The specificity of a system that classifies organisms into the binary categories of individual who meets the criteria of a particular case definition and individual who does NOT meet the criteria of a particular type of disease X.</documentation></annotation></element><element name="timeDelayOfCaseDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000267" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>The duration from the time an organism satisfies a case definition until a process or system detects the organism as satisfying that case definition</documentation></annotation></element></sequence></complexType>
A disposition of a treatment surveillance infrastructure to detect individuals who have received treatment in the geographical region the infrastructure aims to cover.
<complexType name="TreatmentSurveillanceCapability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000394"><annotation><documentation>A disposition of a treatment surveillance infrastructure to detect individuals who have received treatment in the geographical region the infrastructure aims to cover.</documentation></annotation><sequence><element name="location" type="tns:Location" maxOccurs="1" minOccurs="1"></element><element name="treatment" type="tns:IndividualTreatmentEnum" maxOccurs="1" minOccurs="1"></element><element name="sensitivityOfTreatmentDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000383" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>The sensitivity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment.</documentation></annotation></element><element name="specificityOfTreatmentDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000382" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>The specificity of a system that classifies organisms into the binary categories of having received a particular treatment and not having received a particular treatment.</documentation></annotation></element><element name="timeDelayOfTreatmentDetection" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000291" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>The duration from the time an individual receives a treatment until the time a system designed to detect that the treatment occurred detects it in a population</documentation></annotation></element></sequence></complexType>
<complexType name="IndividualTreatmentControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000194"><annotation><documentation>An infectious disease control strategy that immediately targets individuals.</documentation></annotation><complexContent><extension base="tns:InfectiousDiseaseControlMeasure"><sequence><element name="pathogen" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000237" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"></element><element name="taxonOfTreatedIndividual" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"/><element name="individualTreatment" type="tns:Treatment" maxOccurs="1" minOccurs="1"></element><element name="populationTreatmentCensus" type="tns:PopulationTreatmentCensus" maxOccurs="1" minOccurs="0"></element><element name="compliance" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000139" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum about the fraction of individuals in a population that elect to participate in a control strategy when offered.</documentation></annotation></element><element name="delayFromSymptomsToTreatment" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000258" type="tns:Duration" maxOccurs="1" minOccurs="0"><annotation><documentation>The duration between the appearance of symptoms of a disease and the start of a treatment.</documentation></annotation></element><element name="treatmentSystemLogistics" type="tns:TreatmentSystemLogistics" maxOccurs="unbounded" minOccurs="1"></element><element name="targetPopulationsAndPrioritizations" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000282" type="tns:ControlMeasureTargetPopulationsAndPrioritization" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="Treatment" sawsdl:modelReference="http://purl.obolibrary.org/obo/OGMS_0000090"><annotation><documentation>A processual entity whose completion is hypothesized (by a healthcare provider) to alleviate the signs and symptoms associated with a disorder</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="description" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000476" type="string" maxOccurs="1" minOccurs="1"/><element name="speciesOfTreatedOrganism" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000460" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier curated by the NCBI taxonomy database that specifies the taxonomic classification of some organism that is the recipient of some treatment.</documentation></annotation></element><element name="pathogen" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000237" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"></element><element name="numDosesInTreatmentCourse" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000281" type="positiveInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>The count of the number of doses that are part of a treatment course.</documentation></annotation></element><element name="durationOfTreatmentCourse" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000280" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A duration that measures the temporal interval occupied by a treatment course.</documentation></annotation></element><element name="treatmentContraindications" type="tns:TreatmentContraindication" maxOccurs="unbounded" minOccurs="0"/></sequence></extension></complexContent></complexType>
<complexType name="TreatmentContraindication" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000378"><annotation><documentation>A contraindication that increases the risk of a treatment.</documentation></annotation><sequence><element name="description" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000476" type="string" maxOccurs="1" minOccurs="0"/><element name="simulatorReferencablePopulation" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000031" type="tns:TargetPopulationDefinition" maxOccurs="1" minOccurs="0"><annotation><documentation>A simulation of a population or populations of organisms of a particular biological taxon that simulates a particular type of event or types of event that occur in a specified time interval.</documentation></annotation></element><element name="fractionOfSimulatorReferencablePopulation" type="tns:Fraction" maxOccurs="1" minOccurs="0"/></sequence></complexType>
An information content entity that is part of an infectious disease control strategy and that specifies the intended population to which one or more interventions in the control strategy will be applied.
<complexType name="TargetPopulationDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000375"><annotation><documentation>An information content entity that is part of an infectious disease control strategy and that specifies the intended population to which one or more interventions in the control strategy will be applied.</documentation></annotation><sequence><element name="ageRange" type="tns:AgeRangeCategoryDefinition" maxOccurs="1" minOccurs="0"></element><element name="sex" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000007" type="tns:GenderEnum" maxOccurs="1" minOccurs="0"></element><element name="diseaseOutcome" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000204" type="tns:DiseaseOutcomeEnum" maxOccurs="1" minOccurs="0"><annotation><documentation>A processual entity that is either the outcome of a disease course or a part of a disease course and has etiological relevance.</documentation></annotation></element><element name="otherStratification" type="tns:PopulationStratificationEnum" maxOccurs="1" minOccurs="0"></element></sequence></complexType>
<complexType name="ControlMeasureTargetPopulationsAndPrioritization" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000127"><sequence><choice><element name="controlMeasureNamedPrioritizationScheme" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000517" type="tns:NamedPrioritizationSchemeEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An action specification that is part of an infectious disease control strategy that has at least one rule pertaining to some control measure.</documentation></annotation></element><element name="controlMeasureTargetPopulationsAndPrioritization" type="tns:TargetPriorityPopulation" maxOccurs="unbounded" minOccurs="1"></element></choice></sequence></complexType>
<complexType name="RingIndividualTreatmentControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000409"><annotation><documentation>An individual treatment control strategy that immediately targets individuals in the population who are at the perimeter of an epidemic.</documentation></annotation><complexContent><extension base="tns:IndividualTreatmentControlMeasure"><sequence><element name="ringDiameterInMeters" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000430" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>A scalar value specification that gives the diameter in meters of the circular area around which all organisms in a population are living will receive a vaccination as part of a ring vaccination control measure.</documentation></annotation></element></sequence></extension></complexContent></complexType>
A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen.
<complexType name="Vaccination" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000142"><annotation><documentation>A treatment that consists of the administration of antigenic material to stimulate an individual's immune system to develop adaptive immunity to a pathogen.</documentation></annotation><complexContent><extension base="tns:Treatment"><sequence><element name="vaccineId" type="tns:vaccineOntologyId" maxOccurs="1" minOccurs="1"/><element name="vaccinationEfficacies" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000025" type="tns:VaccinationEfficacyForSimulatorConfiguration" maxOccurs="unbounded" minOccurs="1"><annotation><documentation>The infectious disease treatment efficacy of a vaccine.</documentation></annotation></element></sequence></extension></complexContent></complexType>
The disposition of one or more portions of material entity, when administered to a susceptible organism by a certain route and according to a certain schedule, to produce a structural change in an organism of a specific species, whereby this structural change serves as the physical basis of a protective resistance disposition.
<complexType name="TreatmentEfficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000227"><annotation><documentation>The disposition of one or more portions of material entity, when administered to a susceptible organism by a certain route and according to a certain schedule, to produce a structural change in an organism of a specific species, whereby this structural change serves as the physical basis of a protective resistance disposition.</documentation></annotation><sequence><element name="hostIdentifier" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"/><element name="strainIdentifier" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="1"/><element name="forTreatmentPreventableOutcome" type="tns:TreatmentPreventableOutcomeEnum" maxOccurs="1" minOccurs="1"/></sequence></complexType>
<simpleType name="TreatmentPreventableOutcomeEnum" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000290"><annotation><documentation>An objective specification that specifies the disease outcome that a treatment seeks to prevent.</documentation></annotation><restriction base="string"><enumeration value="infection"/><enumeration value="infectiousness"/><enumeration value="sickness requiring medical attention"/><enumeration value="sickness requiring intensive care"/><enumeration value="death"/></restriction></simpleType>
<complexType name="TimeAxisCategoryLabels"><sequence><element name="label" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000009" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>A label is a symbol that is part of some other datum and is used to either partially define the denotation of that datum or to provide a means for identifying the datum as a member of the set of data with the same label</documentation></annotation></element><element name="simulatorTimeEarliest" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"/><element name="simulatorTimeLatest" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"/></sequence></complexType>
A vaccine is a processed material with the function that when administered, it prevents or ameliorates a disorder in a target organism by inducing or modifying adaptive immune responses specific to the antigens in the vaccine.
<complexType name="Vaccine" sawsdl:modelReference="http://purl.obolibrary.org/obo/VO_0000001"><annotation><documentation>A vaccine is a processed material with the function that when administered, it prevents or ameliorates a disorder in a target organism by inducing or modifying adaptive immune responses specific to the antigens in the vaccine.</documentation></annotation><sequence><element name="description" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000476" type="string" maxOccurs="1" minOccurs="1"/><element name="vaccineIdentifier" type="token" maxOccurs="1" minOccurs="1"></element><element name="valence" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000137" type="positiveInteger" maxOccurs="unbounded" minOccurs="1"></element></sequence></complexType>
<complexType name="AntiviralTreatment" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000171"><annotation><documentation>A treatment with an antiviral drug.</documentation></annotation><complexContent><extension base="tns:Treatment"><sequence><element name="antiviralId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000122" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>a unique identifier that refers to an antiviral drug product</documentation></annotation></element><element name="antiviralTreatmentEfficacy" type="tns:AntiviralTreatmentEfficacy" maxOccurs="unbounded" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="AntiviralTreatmentEfficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000048"><annotation><documentation>The infectious disease treatment efficacy of an antiviral drug.</documentation></annotation><complexContent><extension base="tns:TreatmentEfficacy"><sequence><element name="efficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000454" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>A disposition of an organism to (i) undergo some bodily benefit that (ii) is triggered by a planned process.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="DrugTreatment" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000318"><annotation><documentation>A treatment with a drug product.</documentation></annotation><complexContent><extension base="tns:Treatment"><sequence><element name="drugId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000461" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that denotes a drug product.</documentation></annotation></element><element name="drugTreatmentEfficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000502" type="tns:DrugTreatmentEfficacyForSimulatorConfiguration" maxOccurs="unbounded" minOccurs="1"><annotation><documentation>The efficacy measured for some instance(s) of drug treatment for preventing or ameliorating some disease outcome.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="VaccinationEfficacyStudy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000090"><annotation><documentation>a study design execution that has as its specified output one or more measured vaccination efficacy data items</documentation></annotation><sequence><element name="description" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000476" type="string" maxOccurs="1" minOccurs="0"/><element name="vaccinationPreventableOutcome" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000218" type="tns:TreatmentPreventableOutcomeEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>An objective specification that specifies the disease outcome a vaccination seeks to prevent.</documentation></annotation></element><element name="vaccinationEfficacyMeasured" type="tns:VaccinationEfficacyMeasured" maxOccurs="unbounded" minOccurs="1"/><element name="dataSets" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000100" type="string" maxOccurs="unbounded" minOccurs="1"><annotation><documentation>A data item that is an aggregate of other data items of the same type that have something in common. Averages and distributions can be determined for data sets.</documentation></annotation></element><element name="references" type="string" maxOccurs="unbounded" minOccurs="1"/></sequence></complexType>
<complexType name="VaccinationEfficacyMeasured" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000089"><annotation><documentation>A measurement datum that is about a vaccination efficacy and is the specified output of a vaccination efficacy study.</documentation></annotation><complexContent><extension base="tns:TreatmentEfficacy"><sequence><element name="measuredEfficacyValue" type="tns:ConditionalProbabilityTable" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
an infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open.
<complexType name="PlaceClosureControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000229"><annotation><documentation>an infectious disease control strategy that has an action specification that is realized in closing facilities where organisms congregate during times when the facilities normally would be open.</documentation></annotation><complexContent><extension base="tns:InfectiousDiseaseControlMeasure"><sequence><element name="placeClass" type="tns:PlaceEnum" maxOccurs="1" minOccurs="1"></element><element name="closeIndividualPlacesIndependently" type="boolean" maxOccurs="1" minOccurs="1"></element><element name="closurePeriod" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000287" type="tns:Duration" maxOccurs="1" minOccurs="1"></element><element name="householdTransmissionMultiplier" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000284" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a household.</documentation></annotation></element><element name="communityTransmissionMultiplier" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000288" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="0"></element></sequence></extension></complexContent></complexType>
<complexType name="CaseQuarantineControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000230"><annotation><documentation>an infectious disease control strategy that has an action specification that is realized in isolating organsims who are infectious.</documentation></annotation><complexContent><extension base="tns:InfectiousDiseaseControlMeasure"><sequence><element name="quarantinePeriod" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000449" type="tns:Duration" maxOccurs="1" minOccurs="1"><annotation><documentation>A temporal region occupied by some process wherein one or more potentially infectious contact organisms (i.e., contacted organisms) are under physical isolation from other organisms within a population.</documentation></annotation></element><element name="compliance" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000139" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"/><element name="householdTransmissionMultiplier" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000284" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"></element><element name="schoolTransmissionMultiplier" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000283" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"><annotation><documentation>An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a school.</documentation></annotation></element><element name="workplaceTransmissionMultiplier" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000285" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"><annotation><documentation>An epidemic simulator action specification that specifies the factor by which to multiply the transmission coefficient for contacts that occur in a workplace.</documentation></annotation></element></sequence></extension></complexContent></complexType>
A case isolation control measure that has an action specification that is realized in preventing one or more infectious organisms from having physical contact with other organisms.
<complexType name="ContactIsolationControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000489"><annotation><documentation>A case isolation control measure that has an action specification that is realized in preventing one or more infectious organisms from having physical contact with other organisms.</documentation></annotation><complexContent><extension base="tns:InfectiousDiseaseControlMeasure"><sequence><element name="contactDefinition" type="tns:ContactDefinition" maxOccurs="1" minOccurs="1"></element><element name="isolationPeriod" type="tns:Duration" maxOccurs="1" minOccurs="1"></element><element name="compliance" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000139" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"/><element name="efficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000454" type="tns:ProbabilityDistribution" maxOccurs="1" minOccurs="1"></element></sequence></extension></complexContent></complexType>
An information content entity that specifies which kinds of processes involving an interaction between a given organism and either (1) another, potentially infectious organism or (2) a contaminated environment have a sufficiently high probability of resultling in an infection acquisition by the organism to be of interest to an outbreak investigation.
<complexType name="ContactDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000408"><annotation><documentation>An information content entity that specifies which kinds of processes involving an interaction between a given organism and either (1) another, potentially infectious organism or (2) a contaminated environment have a sufficiently high probability of resultling in an infection acquisition by the organism to be of interest to an outbreak investigation.</documentation></annotation><sequence><element name="apolloLabel" type="tns:ContactDefinitionEnum" maxOccurs="1" minOccurs="1"></element><element name="investigationLabel" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0001628" type="token" maxOccurs="1" minOccurs="1"></element><element name="investigationDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0001615" type="token" maxOccurs="1" minOccurs="1"></element><element name="referenceId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000519" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"></element></sequence></complexType>
A travel-related infectious disease control strategy that has an action specification that is realized in restricting movement of organisms across international borders.
<complexType name="BorderControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000228"><annotation><documentation>A travel-related infectious disease control strategy that has an action specification that is realized in restricting movement of organisms across international borders.</documentation></annotation><complexContent><extension base="tns:InfectiousDiseaseControlMeasure"><sequence><element name="probabilityEntryDenied" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000278" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity specifying the probability that entry is denied as part of a border control strategy.</documentation></annotation></element><element name="probabilityExitDenied" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000279" type="tns:Probability" maxOccurs="1" minOccurs="1"><annotation><documentation>An information content entity specifying the probability that exit is denied as part of a border control strategy.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="VectorControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000308"><annotation><documentation>An infectious disease control strategy that has a vector control action specification as part.</documentation></annotation><complexContent><extension base="tns:InfectiousDiseaseControlMeasure"><sequence><element name="vectorTaxonId" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="0"/></sequence></extension></complexContent></complexType>
Complex Type tns:InsecticideTreatedNetControlMeasure
Namespace
http://types.apollo.pitt.edu/v4_0_1/
Annotations
An adult vector control strategy that has 1) an action specification that is realized by the use of insecticide-treated nets within households, and 2) an objective specification that is realized by preventing potentially infectious contacting between some mosquito vector and some human host.
<complexType name="InsecticideTreatedNetControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000499"><annotation><documentation>An adult vector control strategy that has 1) an action specification that is realized by the use of insecticide-treated nets within households, and 2) an objective specification that is realized by preventing potentially infectious contacting between some mosquito vector and some human host.</documentation></annotation><complexContent><extension base="tns:VectorControlMeasure"><sequence><element name="netHolingRate" type="tns:Rate" maxOccurs="1" minOccurs="1"/><element name="nightlyProbabilityOfUse" type="tns:Probability" maxOccurs="1" minOccurs="1"></element><element name="insecticideEfficacyDecayRate" type="tns:Rate" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
A vector control strategy that is realized by releasing individuals of the vector population infected with bacteria of the taxon Wolbachia to inhibit reproduction of individuals in the vector population.
<complexType name="WolbachiaControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000390"><annotation><documentation>A vector control strategy that is realized by releasing individuals of the vector population infected with bacteria of the taxon Wolbachia to inhibit reproduction of individuals in the vector population.</documentation></annotation><complexContent><extension base="tns:VectorControlMeasure"><sequence><element name="wolbachiaSitesEveryNth" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000411" type="positiveInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>A vector release site action specification for a Wolbachia control measure.</documentation></annotation></element><element name="wolbachiaSeedAdultsPerHouse" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000426" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>A vector control action specification that specifies the number of Wolbachia-infected adult mosquitoes to be released at each household for some Wolbachia control measure.</documentation></annotation></element><element name="clearWolbachiaOnMigration" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000427" type="boolean" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator action specification that when set to true, results in the simuator clearing each simulated Wolbachia-infected mosquito of its simulated Wolbachia infection whenever it migrates out of the simulated population location.</documentation></annotation></element><element name="wolbachiaReleaseInterval" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000423" type="tns:FixedDuration" maxOccurs="1" minOccurs="0"><annotation><documentation>A seed release interval for a Wolbachia control measure.</documentation></annotation></element><element name="wolbachiaReleaseSites" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000410" type="tns:WolbachiaReleaseSiteEnum" maxOccurs="1" minOccurs="0"><annotation><documentation>A seed site for a Wolbachia control measure.</documentation></annotation></element><element name="wolbachiaEffectOnEggMortalityRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000418" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>A process of change in the egg mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population.</documentation></annotation></element><element name="wolbachiaEffectOnAdultMortalityRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000419" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>A process of change in the adult mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population.</documentation></annotation></element><element name="wolbachiaEffectOnLarvalMortalityRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000420" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>A process of change in the larval mortality rate of a mosquito population that is the outcome of an infection in that population by a Wolbachia bacteria population.</documentation></annotation></element><element name="wolbachiaEffectOnFecundity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000421" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>A process of change in fecundity of females in a mosquito population that is the outcome of an infection in that population with a Wolbachia bacteria population.</documentation></annotation></element><element name="wolbachiaEffectOnMatingProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000431" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An epidemic simulator actions specification that specifies the factor by which to multiply the mating probability of a male mosquito if it is infected with a Wolbachia bacterium.</documentation></annotation></element><element name="wolbachiaEffectOnLeakageRate" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000412" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>The rate at which offspring of the Wolbachia-infected female mosquito subpopulation (of the overall mosquito population) are not infected with Wolbachia.</documentation></annotation></element><element name="wolbachiaEffectOnVectorialCapacity" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000413" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>The rate at which bites of mosquitoes infected with both Wolbachia and a particular pathogen such as dengue result in an infection in a susceptible human host.</documentation></annotation></element><element name="wolbachiaPreReleaseAdultSuppressionEfficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000415" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An adult vector control strategy that is used prior to a Wolbachia vector control strategy to increase the percentage of the adult population that gets infected with Wolbachia.</documentation></annotation></element><element name="wolbachiaPreReleaseLarvalSuppressionEfficacy" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000416" type="tns:Fraction" maxOccurs="1" minOccurs="0"><annotation><documentation>An larvicide vector control strategy that is used prior to a Wolbachia vector control strategy to increase the percentage of the population that gets infected with Wolbachia.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="LarvicideControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000328"><annotation><documentation>A vector control strategy that has an action specification that is realized by reducing the number of larval-stage organisms of a vector population.</documentation></annotation><complexContent><extension base="tns:VectorControlMeasure"><sequence><element name="coverRadius" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000459" type="tns:Distance" maxOccurs="1" minOccurs="1"><annotation><documentation>A length measurement datum that specifies the radius of a circle that defines the geographical region in which some infectious disease control strategy will be implemented.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="IndoorResidualSprayingVectorControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000391"><annotation><documentation>A vector control strategy that is realized by spraying chemicals in a place to kill individuals of the vector population.</documentation></annotation><complexContent><extension base="tns:VectorControlMeasure"><sequence><element name="coverRadius" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000459" type="tns:Distance" maxOccurs="1" minOccurs="0"/><element name="fractionOfVectorIndividualsAffected" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000437" type="tns:Fraction" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum that is the fraction of a particular adult vector population that have undergone 1) infection acquisition with a pathogen, and 2) have experienced some outcome of the resulting infection.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="ContainerReductionControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000392"><annotation><documentation>A vector control strategy for mosquitoes that is realized by reducing the number of water-containing vessels in which mosquitoes can lay eggs.</documentation></annotation><complexContent><extension base="tns:VectorControlMeasure"><sequence><element name="coverRadius" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000459" type="tns:Distance" maxOccurs="1" minOccurs="1"/><element name="fractionReductionOfEggs" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000438" type="tns:Fraction" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum that is the fraction of eggs laid by a particular host population that has been destroyed and thus will not develop into a new member of the population.</documentation></annotation></element><element name="fractionReductionOfLarvae" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000439" type="tns:Fraction" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement datum that is the fraction of the larval subpopulation of a particular host population that has died due to some event in the population (e.g, due to a particular control measure).</documentation></annotation></element></sequence></extension></complexContent></complexType>
an indivdiual treatment control strategy that prevents infectious disease by treating indivdiuals colonized with a pathogen of a particular species to limit or end the colonization
<complexType name="DecolonizationControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000333"><annotation><documentation>an indivdiual treatment control strategy that prevents infectious disease by treating indivdiuals colonized with a pathogen of a particular species to limit or end the colonization</documentation></annotation><complexContent><extension base="tns:IndividualTreatmentControlMeasure"><sequence><element name="relapseProbability" type="tns:Probability" maxOccurs="1" minOccurs="1"></element><element name="relapseInterval" type="string"/></sequence></extension></complexContent></complexType>
A travel-related infectious disease control strategy whose action specification is realized in restricting travel of organims from one ecosystem to another ecosystem
<complexType name="TravelRestrictionControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000231"><annotation><documentation>A travel-related infectious disease control strategy whose action specification is realized in restricting travel of organims from one ecosystem to another ecosystem</documentation></annotation><complexContent><extension base="tns:InfectiousDiseaseControlMeasure"><sequence><element name="maximumTravelDistanceInKm" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000289" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"></element><element name="compliance" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000139" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="BioticEcosystem" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000104"><annotation><documentation>The biotic ecosystem is the sum total of all organism populations in a particular geographical region.</documentation></annotation></complexType>
The abiotic ecosystem is the sum total of all continuants in a geographical region that are not organisms, parts of organisms, or dependent continuants that inhere in organisms.
<complexType name="AbioticEcosystem" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000100"><annotation><documentation>The abiotic ecosystem is the sum total of all continuants in a geographical region that are not organisms, parts of organisms, or dependent continuants that inhere in organisms.</documentation></annotation></complexType>
The sum of all biotic and abiotic entities in a geographical region.
Diagram
Source
<complexType name="Ecosystem" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000097"><annotation><documentation>The sum of all biotic and abiotic entities in a geographical region.</documentation></annotation></complexType>
A data set that represents 1) one or more collections of organisms at some time and some geographical region; and optionally 2) the school facilities, workplace facilities, and health care facilities in that region.
<complexType name="SyntheticEcosystem" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000528"><annotation><documentation>A data set that represents 1) one or more collections of organisms at some time and some geographical region; and optionally 2) the school facilities, workplace facilities, and health care facilities in that region.</documentation></annotation><sequence><element name="date" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000429" type="dateTime" maxOccurs="1" minOccurs="1"/><element name="location" type="tns:Location" maxOccurs="1" minOccurs="1"/><element name="populations" type="string" maxOccurs="unbounded" minOccurs="1"/><element name="schools" type="tns:SchoolFacility" maxOccurs="unbounded" minOccurs="0"/><element name="workplaces" type="tns:Facility" maxOccurs="unbounded" minOccurs="0"/><element name="healthcareFacilities" type="tns:HealthcareFacilities" maxOccurs="unbounded" minOccurs="0"></element></sequence></complexType>
<complexType name="SchoolFacility" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000064"><annotation><documentation>A facility that is run by a school organization and is the bearer of a school function.</documentation></annotation><complexContent><extension base="tns:Facility"><sequence><element name="numberOfStudents" type="positiveInteger" maxOccurs="1" minOccurs="1"/><element name="units" type="tns:Unit" maxOccurs="unbounded" minOccurs="1"/></sequence></extension></complexContent></complexType>
<simpleType name="FacilityId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000508"><annotation><documentation>An identifier that denotes some architectural structure.</documentation></annotation><restriction base="string"/></simpleType>
<complexType name="Unit"><sequence><element name="unitId" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000003" type="string" maxOccurs="1" minOccurs="1"><annotation><documentation>A measurement unit label is as a label that is part of a scalar measurement datum and denotes a unit of measure.</documentation></annotation></element><element name="unitType" type="tns:UnitEnum" maxOccurs="1" minOccurs="1"></element><element name="numberOfBeds" type="positiveInteger" maxOccurs="1" minOccurs="0"></element><element name="averageLengthOfStay" type="tns:Duration" maxOccurs="1" minOccurs="0"></element></sequence></complexType>
<complexType name="HealthcareFacility" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000063"><annotation><documentation>A facility that is run by a hospital organization and is the bearer of a hospital function.</documentation></annotation><complexContent><extension base="tns:Facility"><sequence><element name="numberOfBeds" type="positiveInteger" maxOccurs="1" minOccurs="1"/><element name="fractionOfPatientsDischargedToHome" type="tns:Fraction" maxOccurs="1" minOccurs="1"/><element name="dischargePaths" type="tns:DischargePathAndProbability" maxOccurs="unbounded" minOccurs="0"></element><element name="dischargeDestinations" type="tns:DischargeDestinationAndProbability" maxOccurs="unbounded" minOccurs="0"/><element name="units" type="tns:Unit" maxOccurs="unbounded" minOccurs="1"></element></sequence></extension></complexContent></complexType>
<complexType name="HouseholdsPointerToData"><complexContent><extension base="tns:Households"><sequence><element name="url" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMIABIS_0000019" type="anyURI" maxOccurs="unbounded" minOccurs="0"><annotation><documentation>A CRID that constitutes a reference to an Internet resource.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="AbioticEcosystemData"><complexContent><extension base="tns:AbioticEcosystem"><sequence><element name="schools" type="tns:SchoolFacility" maxOccurs="unbounded" minOccurs="0"/><element name="workplaces" type="token" maxOccurs="unbounded" minOccurs="0"/><element name="houses" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000074" type="string" maxOccurs="unbounded" minOccurs="0"><annotation><documentation>A material entity that has as parts one or more sites large enough to contain humans, has as part one or more material entities that separates it from other sites, and bears a residence function.</documentation></annotation></element><element name="healthcareFacilities" type="tns:HealthcareFacility" maxOccurs="unbounded" minOccurs="0"></element></sequence></extension></complexContent></complexType>
A process whose beginning is demarcated by accelerating infection acquisition by one or more host species of a particular pathogen in a particular location and whose end is demarcated by the time when the rate of infection acquisition becomes constant.
<complexType name="PopulationInfectionSurvey" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000155"><annotation><documentation>A population survey that counts the number of individuals in the population who are infected with a particular pathogen.</documentation></annotation><sequence><element name="speciesSampled" type="token" maxOccurs="1" minOccurs="1"/><element name="speciesSampledNcbiTaxonId" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"/><element name="numberSampled" type="positiveInteger" maxOccurs="1" minOccurs="1"/><element name="whereSampled" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000520" type="token" maxOccurs="1" minOccurs="0"><annotation><documentation>A geographic region that contains a sampling process.</documentation></annotation></element><element name="testName" type="token" maxOccurs="1" minOccurs="0"/><element name="testLoincId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000494" type="tns:LoincId" maxOccurs="1" minOccurs="0"><annotation><documentation>A LOINC identifier that refers to some clinical laboratory test conducted in a particular context..</documentation></annotation></element><element name="numberOfSamplesPositive" type="token" maxOccurs="1" minOccurs="0"/><element name="referenceId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000519" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"/></sequence></complexType>
<complexType name="CaseDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000296"><annotation><documentation>An information content entity that specifies the criteria that an organism must meet to be considered to be in some abnormal state.</documentation></annotation><complexContent><extension base="tns:CategoryDefinition"><sequence><element name="apolloLabel" type="tns:CaseDefinitionEnum" maxOccurs="1" minOccurs="1"></element><element name="investigationLabel" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0001628" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>A CRID symbol used to identify an investigation.</documentation></annotation></element><element name="investigationDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/OBI_0001615" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>A textual entity that describes an investigation.</documentation></annotation></element><element name="referenceId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000519" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"></element></sequence></extension></complexContent></complexType>
<complexType name="CaseList" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000397"><annotation><documentation>A data set that is a collection of case records.</documentation></annotation><sequence><element name="speciesOfCases" type="tns:NcbiTaxonId" maxOccurs="1" minOccurs="1"></element><element name="caseRecords" type="tns:CaseRecord" maxOccurs="unbounded" minOccurs="1"></element></sequence></complexType>
A data set whose data items are about a host and its participation in an infection and potentially other activities occuring in the same time interval as the infection.
<complexType name="CaseRecord" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000398"><annotation><documentation>A data set whose data items are about a host and its participation in an infection and potentially other activities occuring in the same time interval as the infection.</documentation></annotation><sequence><element name="caseId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000510" type="token" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that denotes an organism included in some infection case count.</documentation></annotation></element><element name="ageInYears" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000504" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>A time measurement datum that refers to the temporal interval occupied by the life course of some organism and that takes 'years' as its measurement unit label.</documentation></annotation></element><element name="sex" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000007" type="tns:GenderEnum" maxOccurs="1" minOccurs="0"/><element name="race" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMRSE_00000098" type="string" maxOccurs="unbounded" minOccurs="0"><annotation><documentation>A racial identity is an information content entity that is the output of some racial identitification process and is intended to be a truthful statement about the genetic or cultural race of a person. Unlike data items they are not necessilary contributed or acquired by a reliable method.</documentation></annotation></element><element name="occupations" type="tns:OccupationEnum" maxOccurs="unbounded" minOccurs="0"/><element name="placesVisitedWhileSusceptibleOrInfectious" type="tns:PlaceVisited" maxOccurs="unbounded" minOccurs="0"/><element name="infectionAcquiredFromCaseId" type="token" maxOccurs="1" minOccurs="0"/><element name="diseaseOutcomesWithLocationDateTime" type="tns:DiseaseOutcomeWithLocationDateTime" maxOccurs="unbounded" minOccurs="0"/><element name="labTestsAndResults" type="tns:LabTestAndResult" maxOccurs="unbounded" minOccurs="0"/><element name="pathogenGeneSequence" type="string" maxOccurs="1" minOccurs="0"/><element name="references" type="tns:Reference" maxOccurs="unbounded" minOccurs="0"/><!-- New elements added for Rabies case records --><!-- New elements added for Rabies case records --><element name="caseClassification" type="string" maxOccurs="1" minOccurs="0"/><element name="location" type="tns:ApolloLocationCode" maxOccurs="unbounded" minOccurs="0"/><element name="caseDefinition" type="tns:CaseDefinition" maxOccurs="1" minOccurs="0"/><element name="causalPathogen" type="tns:ApolloPathogenCode" maxOccurs="1" minOccurs="0"/><element name="treatment" type="tns:Treatment" maxOccurs="unbounded" minOccurs="0"/><element name="infectionSource" type="tns:InfectionSource" maxOccurs="unbounded" minOccurs="0"/><element name="controlMeasures" type="tns:InfectiousDiseaseControlMeasure" maxOccurs="unbounded" minOccurs="0"/></sequence></complexType>
A data set that comprises exactly one latitude measurement datum and exactly one longitude measurement datum as its elements, and optiionally the geodetic datum used as the coordinate system for the measurements, and each of these measurements is about the same zero-dimensional geographical region.
<complexType name="LatLongPair" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000503"><annotation><documentation>A data set that comprises exactly one latitude measurement datum and exactly one longitude measurement datum as its elements, and optiionally the geodetic datum used as the coordinate system for the measurements, and each of these measurements is about the same zero-dimensional geographical region.</documentation></annotation><sequence><element name="latitutde" type="tns:Latitude" minOccurs="1" maxOccurs="1"/><element name="longitude" type="tns:Longitude" minOccurs="1" maxOccurs="1"/></sequence></complexType>
<complexType name="Reference" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000301"><sequence><element name="id" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"/><element name="title" type="string" maxOccurs="1" minOccurs="1"/><element name="authors" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000321" type="string" maxOccurs="1" minOccurs="0"/><element name="publication" sawsdl:modelReference="http://purl.obolibrary.org/obo/IAO_0000311" type="string" maxOccurs="1" minOccurs="0"></element><element name="url" sawsdl:modelReference="http://purl.obolibrary.org/obo/OMIABIS_0000019" type="anyURI" maxOccurs="1" minOccurs="1"/><element name="pubMedId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000495" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"><annotation><documentation>An identifier curated by the United States National Library of Medicine and National Institutes of Health that denotes some publication record in the MEDLINE database.</documentation></annotation></element><element name="orcId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000496" type="string" maxOccurs="1" minOccurs="0"><annotation><documentation>An identifier curated by ORCID, Inc. to denote some academic author.</documentation></annotation></element><element name="obcIdeId" type="nonNegativeInteger" maxOccurs="1" minOccurs="0"/></sequence></complexType>
<complexType name="EpidemicCaseCounts" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000498"><annotation><documentation>A count of disease cases in an infected population that meet the case definition criteria within a particular epidemic interval.</documentation></annotation><complexContent><extension base="tns:ApolloIndexableItem"><sequence><element name="totalCaseCount" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000569" type="tns:CaseCount" maxOccurs="1" minOccurs="0"><annotation><documentation>A data item that is the output of some infection case count.</documentation></annotation></element><element name="totalFatalCaseCount" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000568" type="tns:CaseCount" maxOccurs="1" minOccurs="0"><annotation><documentation>A data item that is the output of some infection case count and that represents the number of infectious disease cases that ended in death.</documentation></annotation></element><element name="otherCaseCounts" type="tns:CaseCount" maxOccurs="unbounded" minOccurs="0"/></sequence></extension></complexContent></complexType>
<complexType name="CaseCount" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000497"><annotation><documentation>A count of individuals in a population who meet the criteria of some case definition during some time interval.</documentation></annotation><sequence><element name="countTitle" type="string" maxOccurs="1" minOccurs="1"/><element name="caseDefinitionsIncluded" type="tns:CaseDefinitionEnum" maxOccurs="unbounded" minOccurs="1"/><element name="caseCountArrayDescription" type="tns:CaseCountArrayDescription" minOccurs="1" maxOccurs="1"/><choice><element name="totalCount" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"/><element name="caseCountArray" type="tns:VariableCategoryValueTree" maxOccurs="1" minOccurs="1"/><element name="temporalCountArrayWithUniformIntervals" type="tns:TemporalCountArrayWithUniformIntervals" maxOccurs="1" minOccurs="1"/></choice><element name="referenceId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000519" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"/></sequence></complexType>
A data structure that represents, for a particular infection in ecosystem, a subset of infected organisms and for each infected organism in the subset except the first one infected temporally, its infection acquisition from an infected host as a machine-readable link to that infected host.
<complexType name="TransmissionTree" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000403"><annotation><documentation>A data structure that represents, for a particular infection in ecosystem, a subset of infected organisms and for each infected organism in the subset except the first one infected temporally, its infection acquisition from an infected host as a machine-readable link to that infected host.</documentation></annotation><sequence><element name="thisCase" type="tns:CaseRecord" maxOccurs="1" minOccurs="1"></element><element name="casesThisCaseInfected" type="tns:TransmissionTree" maxOccurs="unbounded" minOccurs="0"></element></sequence></complexType>
<complexType name="IndividualDisease" sawsdl:modelReference="http://purl.obolibrary.org/obo/OGMS_0000031"><annotation><documentation>A disposition (i) to undergo pathological processes that (ii) exists in an organism because of one or more disorders in that organism.</documentation></annotation><sequence><element name="snomedId" type="tns:SnomedId" maxOccurs="1" minOccurs="1"></element><element name="diseaseOutcomesWithDates" type="tns:DiseaseOutcomeWithDate" maxOccurs="unbounded" minOccurs="1"></element></sequence></complexType>
<complexType name="ConditionalIndividualBehavior"><complexContent><extension base="tns:Behavior"><sequence><element name="behavior" type="tns:BehaviorEnum" maxOccurs="1" minOccurs="1"></element><element name="conditionalProbability" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000529" type="tns:ConditionalProbabilityDistribution" maxOccurs="1" minOccurs="1"><annotation><documentation>A probability whose value is dependent upon the occurrence, known or presumed, of some process.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="CaseRecordCategoricalVariable"><sequence><element name="categoricalVariable" sawsdl:modelReference="http://purl.obolibrary.org/obo/STATO_0000252" type="tns:CategoricalVariableEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>a categorical variable is a variable which that can only assume a finite number of value and cast observation in a small number of categories</documentation></annotation></element><element name="categories" type="tns:CategoryDefinition" maxOccurs="unbounded" minOccurs="1"></element></sequence></complexType>
<complexType name="CaseVariableAndValue"><sequence><element name="variable" sawsdl:modelReference="http://purl.obolibrary.org/obo/STATO_0000258" type="string"><annotation><documentation>a variable is a data item which can assume any of a set of values, either as determined by an agent or as randomly occuring through observation.</documentation></annotation></element><element name="categoryDefinition" type="tns:CategoryDefinition" maxOccurs="1" minOccurs="1"></element><element name="value" type="string"/></sequence></complexType>
<complexType name="TimeSpanCategoryDefinition" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000242"><annotation><documentation>An information content entity that specifies a time span on a specified time scale by giving a start time and a duration.</documentation></annotation><complexContent><extension base="tns:CategoryDefinition"><sequence><element name="unitOfTime" sawsdl:modelReference="http://purl.obolibrary.org/obo/UO_0000003" type="tns:UnitOfTimeEnum" maxOccurs="1" minOccurs="1"></element><element name="timeZeroReference" type="tns:TimeScaleEnum" maxOccurs="1" minOccurs="1"></element><element name="startOfTimeSpan" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"/><element name="durationInTimeUnits" type="nonNegativeInteger" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
<complexType name="HealthcareFacilityCategoryDefinition"><complexContent><extension base="tns:CategoryDefinition"><sequence><element name="healthcareFacilityId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000506" type="tns:RheaHealthcareFacilityEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A healthcare facility identifier that refers to some architectural structure that is the bearer of some healthcare function.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="EmploymentStatusCategoryDefinition"><complexContent><extension base="tns:CategoryDefinition"><sequence><element name="employmentStatus" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000570" type="tns:EmploymentStatusEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A data item that denotes some context in which an individual realizes some employee role if he or she is a member of the labor force, or the context in which he or she is not a member of the labor force according to certain prespecified conditions.</documentation></annotation></element></sequence></extension></complexContent></complexType>
<complexType name="ModelIdAndProbability"><sequence><element name="modelId" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000507" type="string" maxOccurs="1" minOccurs="1"><annotation><documentation>An identifier that refers to some disease transmission model model.</documentation></annotation></element><element name="probability" type="tns:Probability" maxOccurs="1" minOccurs="1"/></sequence></complexType>
<complexType name="GesInfectiousnessParameterSet"><sequence><element name="infectiousnessProfile" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000226" type="tns:ContinuousParametricProbabilityDistribution" maxOccurs="1" minOccurs="0"><annotation><documentation>A process profile that specifies the degree to which a host is likely to pass on an infection to a susceptible organism.</documentation></annotation></element><element name="treat_inf" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"></element><element name="prophylaxis_inf" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"></element><element name="vacc_inf" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"></element><element name="relative_inf_symptomatic_multiplier" type="tns:NonNegativeDouble" maxOccurs="1" minOccurs="1"></element></sequence></complexType>
An information content entity that specifies the length in time of a single simulator step (e.g., 1 day) and the requested run length of the simulation (number of steps).
<complexType name="SimulatorTimeSpecification" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000183"><annotation><documentation>An information content entity that specifies the length in time of a single simulator step (e.g., 1 day) and the requested run length of the simulation (number of steps).</documentation></annotation><sequence><element name="unitOfTimeForSimulatorTimeStep" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000014" type="tns:UnitOfTimeEnum" maxOccurs="1" minOccurs="1"><annotation><documentation>A time unit that is part of a simulation time step action specification.</documentation></annotation></element><element name="numberOfUnitsOfTimeInOneSimulatorTimeStep" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000012" maxOccurs="1" minOccurs="1" type="tns:PositiveDouble"><annotation><documentation>A numeral that is part of a simulation time step action specification.</documentation></annotation></element><element name="runLength" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000015" type="positiveInteger" maxOccurs="1" minOccurs="1"><annotation><documentation>The action specification that specifies the number of time steps a simulation is going to run.</documentation></annotation></element></sequence></complexType>
An infectious disease conrol straegy that seeks to reduce disease transmission by offering employees extra paid time off to stay home, in an attempt to reduce contacts that transmit disease in the workplace.
<complexType name="LiberalSickLeaveControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000323"><annotation><documentation>An infectious disease conrol straegy that seeks to reduce disease transmission by offering employees extra paid time off to stay home, in an attempt to reduce contacts that transmit disease in the workplace.</documentation></annotation><complexContent><extension base="tns:InfectiousDiseaseControlMeasure"><sequence><element name="compliance" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000139" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>
Complex Type tns:VoluntaryHouseholdQuarantineControlMeasure
Namespace
http://types.apollo.pitt.edu/v4_0_1/
Annotations
An infectious disease control strategy whereby the household members of infectious indivduals voluntarily stay at home to avoid further potentially infectious contacts.
<complexType name="VoluntaryHouseholdQuarantineControlMeasure" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000322"><annotation><documentation>An infectious disease control strategy whereby the household members of infectious indivduals voluntarily stay at home to avoid further potentially infectious contacts.</documentation></annotation><complexContent><extension base="tns:InfectiousDiseaseControlMeasure"><sequence><element name="compliance" sawsdl:modelReference="http://purl.obolibrary.org/obo/APOLLO_SV_00000139" type="tns:ProbabilisticParameter" maxOccurs="1" minOccurs="1"/></sequence></extension></complexContent></complexType>